Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SNORD115-18-201ENST00000363293 82 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 RNU6-103P-201ENST00000363686 107 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 SNORD115-17-201ENST00000364612 82 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 RNU6-290P-201ENST00000365212 101 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 RNU6-746P-201ENST00000384112 109 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 RNU6-90P-201ENST00000606352 106 ntBASIC-1.17□□□□□ -2.6
CHD3Q12873 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.17□□□□□ -2.6
CHD3Q12873 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 RNU1-115P-201ENST00000365329 160 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 AL078595.1-201ENST00000404458 226 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 RNU7-88P-201ENST00000458752 63 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 RNU6-412P-201ENST00000516434 106 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 AC073869.6-201ENST00000640656 341 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 SNORD115-33-201ENST00000363723 82 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.18□□□□□ -2.6
CHD3Q12873 AC090971.5-201ENST00000621102 293 ntBASIC-1.18□□□□□ -2.6
CHD3Q12873 MIR203A-201ENST00000384836 110 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 RNU7-164P-201ENST00000459221 62 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 RNU2-4P-201ENST00000606190 192 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 AL132765.2-201ENST00000610812 351 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1.19□□□□□ -2.6
CHD3Q12873 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RNU6-647P-201ENST00000364243 107 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RNU6-80P-201ENST00000384195 107 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 U3.27-201ENST00000391237 200 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 SNORD2.1-201ENST00000458762 69 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RNU6-732P-201ENST00000516033 103 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 MIR34C-201ENST00000384831 77 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 MIR519A2-201ENST00000384990 87 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 MT-TI-201ENST00000387365 69 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RNU6-651P-201ENST00000411040 105 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RNU6-277P-201ENST00000516272 106 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.2□□□□□ -2.6
CHD3Q12873 MIR4744-201ENST00000581563 82 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 AL137067.1-201ENST00000615933 120 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 MIR6502-201ENST00000617296 76 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 AL512310.12-203ENST00000640543 90 ntBASIC-1.2□□□□□ -2.6
CHD3Q12873 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 RNU6-774P-201ENST00000363238 107 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 RNU6-309P-201ENST00000364573 106 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 RNY4P7-201ENST00000364600 96 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 MIR507-201ENST00000385234 94 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 MIR1277-201ENST00000408536 78 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 FGF7P4-201ENST00000509595 295 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 SNORD63.1-201ENST00000516178 80 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 AC108081.1-201ENST00000604358 221 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 AC092794.1-201ENST00000612734 582 ntBASIC-1.21□□□□□ -2.6
CHD3Q12873 SNORA63.2-201ENST00000362603 126 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 SNORD115-27-201ENST00000364430 82 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.573-201ENST00000384763 105 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 MIR559-201ENST00000385188 96 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 AC138393.2-201ENST00000414742 246 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 SNORA20.3-201ENST00000516880 132 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 MIR6509-201ENST00000614603 85 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 AL442128.1-201ENST00000615151 90 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 MIR1255B1-201ENST00000636325 63 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 U6.106-201ENST00000636360 105 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 SNORA2.1-201ENST00000363089 137 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 RNU6-508P-201ENST00000363231 103 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 MTATP6P29-201ENST00000415057 132 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 MIR3657-201ENST00000584818 117 ntBASIC-1.22□□□□□ -2.6
CHD3Q12873 SNORA33.1-201ENST00000364957 130 ntBASIC-1.23□□□□□ -2.61
CHD3Q12873 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.23□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 294.6 ms