Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SNORD71-201ENST00000411292 86 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.51□□□□□ -2.33
HDAC4P56524 RNU7-195P-201ENST00000458793 62 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 SNORA68.3-201ENST00000515906 83 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 SNORA25.18-201ENST00000607153 114 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 MIR7107-201ENST00000611489 80 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 Y_RNA.49-201ENST00000362714 112 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 RNU6-832P-201ENST00000363319 107 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 SNORD115-24-201ENST00000363528 82 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 RNA5SP403-201ENST00000363598 108 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 MIR516A2-201ENST00000384888 90 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 MIR516A1-201ENST00000385033 90 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 AC098934.3-201ENST00000430450 190 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 AC097635.1-201ENST00000450678 155 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 RNU6-229P-201ENST00000516614 102 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 RNU7-10P-201ENST00000607194 63 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 MIR2909-201ENST00000617113 69 ntBASIC0.5□□□□□ -2.33
HDAC4P56524 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
HDAC4P56524 RNY3P2-201ENST00000362918 102 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNU6-1163P-201ENST00000364516 107 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNU6-1107P-201ENST00000364817 104 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 Y_RNA.342-201ENST00000365352 113 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNU6-1014P-201ENST00000383940 103 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 SNORD38.2-201ENST00000384470 69 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 MIR518A1-201ENST00000385068 85 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 MIR599-201ENST00000385069 95 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNA5SP63-201ENST00000391225 112 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 SNORA40.8-201ENST00000411034 126 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 SPINT5P-201ENST00000448174 155 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNA5SP268-201ENST00000516828 124 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 MTND5P40-201ENST00000559945 246 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNU6-90P-201ENST00000606352 106 ntBASIC0.49□□□□□ -2.33
HDAC4P56524 RNU6-834P-201ENST00000362367 110 ntBASIC0.48□□□□□ -2.33
HDAC4P56524 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.48□□□□□ -2.33
HDAC4P56524 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.48□□□□□ -2.33
HDAC4P56524 RNU6-589P-201ENST00000516485 107 ntBASIC0.48□□□□□ -2.33
HDAC4P56524 U2.22-201ENST00000636441 106 ntBASIC0.48□□□□□ -2.33
HDAC4P56524 Y_RNA.221-201ENST00000364248 96 ntBASIC0.47□□□□□ -2.33
HDAC4P56524 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
HDAC4P56524 Y_RNA.809-201ENST00000516058 95 ntBASIC0.47□□□□□ -2.33
HDAC4P56524 AC091304.10-201ENST00000641554 121 ntBASIC0.47□□□□□ -2.33
HDAC4P56524 RNU6-1260P-201ENST00000362944 107 ntBASIC0.46□□□□□ -2.34
HDAC4P56524 RNU6-726P-201ENST00000364680 107 ntBASIC0.46□□□□□ -2.34
HDAC4P56524 SNORA19.1-201ENST00000410656 129 ntBASIC0.46□□□□□ -2.34
HDAC4P56524 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
HDAC4P56524 AC023932.2-201ENST00000603176 175 ntBASIC0.46□□□□□ -2.34
HDAC4P56524 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.46□□□□□ -2.34
HDAC4P56524 MIRLET7D-201ENST00000362263 87 ntBASIC0.45□□□□□ -2.34
HDAC4P56524 SNORD36A-201ENST00000362874 73 ntBASIC0.45□□□□□ -2.34
HDAC4P56524 SNORD44.1-201ENST00000363202 61 ntBASIC0.45□□□□□ -2.34
HDAC4P56524 RNU6-1056P-201ENST00000383996 107 ntBASIC0.45□□□□□ -2.34
HDAC4P56524 AC109327.2-201ENST00000448339 378 ntBASIC0.44□□□□□ -2.34
HDAC4P56524 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.44□□□□□ -2.34
HDAC4P56524 RNA5SP227-201ENST00000516184 113 ntBASIC0.44□□□□□ -2.34
HDAC4P56524 RNU6-1265P-201ENST00000516342 103 ntBASIC0.44□□□□□ -2.34
HDAC4P56524 RNU6-412P-201ENST00000516434 106 ntBASIC0.44□□□□□ -2.34
HDAC4P56524 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
HDAC4P56524 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
HDAC4P56524 MIR103A1-201ENST00000362165 78 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 Y_RNA.57-201ENST00000362806 113 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 RNU6-1244P-201ENST00000363614 108 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 Y_RNA.273-201ENST00000364703 102 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 RNU6-524P-201ENST00000384270 107 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.43□□□□□ -2.34
HDAC4P56524 AC069271.1-201ENST00000445577 156 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 RNU7-104P-201ENST00000459398 79 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 AC141557.1-201ENST00000540982 400 ntBASIC0.43□□□□□ -2.34
HDAC4P56524 RNU6-106P-201ENST00000384405 107 ntBASIC0.42□□□□□ -2.34
HDAC4P56524 RNU6-1254P-201ENST00000391266 104 ntBASIC0.42□□□□□ -2.34
HDAC4P56524 RNU6-537P-201ENST00000517277 103 ntBASIC0.42□□□□□ -2.34
HDAC4P56524 MIR548Z-201ENST00000584743 97 ntBASIC0.42□□□□□ -2.34
HDAC4P56524 RNU1-29P-201ENST00000606574 126 ntBASIC0.42□□□□□ -2.34
HDAC4P56524 RNU6-1290P-201ENST00000362957 109 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 RNU6-1126P-201ENST00000384002 107 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 MIR181B2-201ENST00000385004 89 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 SNORD41.1-201ENST00000391000 69 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 RNU6-554P-201ENST00000410466 106 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 Y_RNA.659-201ENST00000515994 113 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 RNU6-904P-201ENST00000516206 101 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 Y_RNA.709-201ENST00000516952 92 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 AC096720.1-201ENST00000604441 183 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 RNU6-86P-201ENST00000606534 107 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 MIR6755-201ENST00000619993 66 ntBASIC0.41□□□□□ -2.34
HDAC4P56524 Y_RNA.163-201ENST00000363702 113 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 MIR1265-201ENST00000408444 86 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 AL161932.1-201ENST00000437408 146 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 RNU6-863P-201ENST00000515989 104 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 MIR3920-201ENST00000581751 86 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 MIR4777-201ENST00000583710 86 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 AL162376.1-201ENST00000624117 175 ntBASIC0.4□□□□□ -2.35
HDAC4P56524 MIR329-2-201ENST00000385029 84 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 RNY4P18-201ENST00000391107 89 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 Y_RNA.629-201ENST00000411368 105 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 MIR4752-201ENST00000579672 72 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 uc_338.28-201ENST00000612082 187 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 AC012531.4-201ENST00000616509 177 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 AC067863.3-201ENST00000624172 122 ntBASIC0.39□□□□□ -2.35
HDAC4P56524 Y_RNA.78-201ENST00000362970 110 ntBASIC0.38□□□□□ -2.35
HDAC4P56524 Y_RNA.95-201ENST00000363079 95 ntBASIC0.38□□□□□ -2.35
HDAC4P56524 RNU6-1325P-201ENST00000364905 105 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 267.6 ms