Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.78□□□□□ -2.28
PDLIM4P50479 AC025521.1-201ENST00000621624 286 ntBASIC0.78□□□□□ -2.28
PDLIM4P50479 SNORD114-26-201ENST00000363543 72 ntBASIC0.77□□□□□ -2.29
PDLIM4P50479 RNU6-49P-201ENST00000384256 107 ntBASIC0.77□□□□□ -2.29
PDLIM4P50479 RNY4P30-201ENST00000410216 95 ntBASIC0.77□□□□□ -2.29
PDLIM4P50479 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.76□□□□□ -2.29
PDLIM4P50479 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.76□□□□□ -2.29
PDLIM4P50479 Y_RNA.190-201ENST00000363964 101 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 RNU6-1335P-201ENST00000365426 107 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 RNU4-45P-201ENST00000365469 141 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 RNU6-243P-201ENST00000391140 107 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 Y_RNA.809-201ENST00000516058 95 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 SNORA31.14-201ENST00000516728 116 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.76□□□□□ -2.29
PDLIM4P50479 CYP3A137P-201ENST00000562436 69 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
PDLIM4P50479 MIR373-201ENST00000362273 69 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 Y_RNA.32-201ENST00000362589 110 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 RNA5SP245-201ENST00000364239 121 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 RNU6-1131P-201ENST00000364955 107 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 AL161932.1-201ENST00000437408 146 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 AC026421.1-201ENST00000519101 163 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 MIR3973-201ENST00000579824 107 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
PDLIM4P50479 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.75□□□□□ -2.29
PDLIM4P50479 RNA5SP117-201ENST00000365294 118 ntBASIC0.74□□□□□ -2.29
PDLIM4P50479 MIR598-201ENST00000384868 97 ntBASIC0.74□□□□□ -2.29
PDLIM4P50479 RNU7-195P-201ENST00000458793 62 ntBASIC0.74□□□□□ -2.29
PDLIM4P50479 RNU6-162P-201ENST00000516228 103 ntBASIC0.74□□□□□ -2.29
PDLIM4P50479 MIR4698-201ENST00000577795 80 ntBASIC0.74□□□□□ -2.29
PDLIM4P50479 RNY1P7-201ENST00000384743 110 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 MIR599-201ENST00000385069 95 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 AC244098.3-201ENST00000424803 96 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 SNORD4B-201ENST00000459083 72 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 RNU6-1265P-201ENST00000516342 103 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 MIR3612-201ENST00000579753 87 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 MTRNR2L2-201ENST00000604882 87 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 PVT1_3.1-201ENST00000620853 95 ntBASIC0.73□□□□□ -2.29
PDLIM4P50479 Y_RNA.36-201ENST00000362602 112 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 RNU6-294P-201ENST00000364999 102 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 RNU6-497P-201ENST00000365316 104 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 RNU6-675P-201ENST00000384236 104 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 SNORD116-22-201ENST00000384430 92 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 Y_RNA.558-201ENST00000384685 113 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 MIR4639-201ENST00000584938 69 ntBASIC0.72□□□□□ -2.29
PDLIM4P50479 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.72□□□□□ -2.29
PDLIM4P50479 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
PDLIM4P50479 RNA5SP403-201ENST00000363598 108 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 Y_RNA.283-201ENST00000364798 112 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
PDLIM4P50479 RNU7-85P-201ENST00000458851 63 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 RNU6-75P-201ENST00000515944 104 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 AC006254.2-201ENST00000603259 279 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 MIR6779-201ENST00000617283 64 ntBASIC0.71□□□□□ -2.3
PDLIM4P50479 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.71□□□□□ -2.3
PDLIM4P50479 MIR608-201ENST00000384820 100 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 RNU6-466P-201ENST00000391224 103 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 Y_RNA.620-201ENST00000411009 88 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.7□□□□□ -2.3
PDLIM4P50479 snoU13.11-201ENST00000459219 104 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 ACA64.5-201ENST00000516207 127 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 AC011195.1-201ENST00000578177 177 ntBASIC0.7□□□□□ -2.3
PDLIM4P50479 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.7□□□□□ -2.3
PDLIM4P50479 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
PDLIM4P50479 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.7□□□□□ -2.3
PDLIM4P50479 MIR18A-201ENST00000362310 71 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU6-633P-201ENST00000362612 103 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 SNORD18A-201ENST00000363753 72 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 SNORD114-2-201ENST00000363953 78 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU6-219P-201ENST00000364728 107 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU6-524P-201ENST00000384270 107 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 SNORD28-201ENST00000384706 75 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU6-519P-201ENST00000410590 108 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 MIR3678-201ENST00000578455 94 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 MIR4668-201ENST00000582284 70 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 MIR6866-201ENST00000638146 69 ntBASIC0.69□□□□□ -2.3
PDLIM4P50479 RNU6-957P-201ENST00000363652 99 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 SNORD115-44-201ENST00000365391 82 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 Y_RNA.609-201ENST00000410669 89 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 RNU6-469P-201ENST00000516253 101 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 RNA5SP47-201ENST00000517230 109 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 MIR4536-1-201ENST00000583537 88 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 TRDV1-202ENST00000621643 102 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 MIR6828-201ENST00000636181 60 ntBASIC0.68□□□□□ -2.3
PDLIM4P50479 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
PDLIM4P50479 Y_RNA.17-201ENST00000362433 111 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 SNORD115-24-201ENST00000363528 82 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 MIR644A-201ENST00000385262 94 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 MIR1302-4-201ENST00000408701 150 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 PSMC1P5-201ENST00000512850 177 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 RNU6-65P-201ENST00000516332 98 ntBASIC0.67□□□□□ -2.3
PDLIM4P50479 RNU7-161P-201ENST00000517289 62 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 196.1 ms