Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 SNORA36.2-201ENST00000384004 127 ntBASIC0.69□□□□□ -2.3
RFX2P48378 RNY1P4-201ENST00000384595 115 ntBASIC0.69□□□□□ -2.3
RFX2P48378 SNORD28-201ENST00000384706 75 ntBASIC0.69□□□□□ -2.3
RFX2P48378 SNORD4B-201ENST00000459083 72 ntBASIC0.69□□□□□ -2.3
RFX2P48378 RNU7-104P-201ENST00000459398 79 ntBASIC0.69□□□□□ -2.3
RFX2P48378 RNU7-161P-201ENST00000517289 62 ntBASIC0.69□□□□□ -2.3
RFX2P48378 MIR4536-1-201ENST00000583537 88 ntBASIC0.69□□□□□ -2.3
RFX2P48378 AC244669.1-204ENST00000621564 178 ntBASIC0.69□□□□□ -2.3
RFX2P48378 RNU6-1229P-201ENST00000364295 107 ntBASIC0.68□□□□□ -2.3
RFX2P48378 MIR532-201ENST00000385025 91 ntBASIC0.68□□□□□ -2.3
RFX2P48378 PSMC1P5-201ENST00000512850 177 ntBASIC0.68□□□□□ -2.3
RFX2P48378 TRMT112P2-201ENST00000512910 132 ntBASIC0.68□□□□□ -2.3
RFX2P48378 RNU6-75P-201ENST00000515944 104 ntBASIC0.68□□□□□ -2.3
RFX2P48378 RNU6-65P-201ENST00000516332 98 ntBASIC0.68□□□□□ -2.3
RFX2P48378 RNU6-135P-201ENST00000516769 101 ntBASIC0.68□□□□□ -2.3
RFX2P48378 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.68□□□□□ -2.3
RFX2P48378 MIR4698-201ENST00000577795 80 ntBASIC0.68□□□□□ -2.3
RFX2P48378 MIR4639-201ENST00000584938 69 ntBASIC0.68□□□□□ -2.3
RFX2P48378 RNA5SP432-201ENST00000362480 116 ntBASIC0.67□□□□□ -2.3
RFX2P48378 RNA5SP403-201ENST00000363598 108 ntBASIC0.67□□□□□ -2.3
RFX2P48378 RNU6-392P-201ENST00000364926 101 ntBASIC0.67□□□□□ -2.3
RFX2P48378 Y_RNA.338-201ENST00000365320 114 ntBASIC0.67□□□□□ -2.3
RFX2P48378 RNU6-402P-201ENST00000410678 103 ntBASIC0.67□□□□□ -2.3
RFX2P48378 RNU6-1265P-201ENST00000516342 103 ntBASIC0.67□□□□□ -2.3
RFX2P48378 MIR4498-201ENST00000577599 66 ntBASIC0.67□□□□□ -2.3
RFX2P48378 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
RFX2P48378 AC006254.2-201ENST00000603259 279 ntBASIC0.67□□□□□ -2.3
RFX2P48378 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.67□□□□□ -2.3
RFX2P48378 U6.100-201ENST00000636230 99 ntBASIC0.67□□□□□ -2.3
RFX2P48378 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.66□□□□□ -2.3
RFX2P48378 MIR337-201ENST00000362281 93 ntBASIC0.66□□□□□ -2.3
RFX2P48378 RNU4-32P-201ENST00000363404 141 ntBASIC0.66□□□□□ -2.3
RFX2P48378 SNORD116-22-201ENST00000384430 92 ntBASIC0.66□□□□□ -2.3
RFX2P48378 RNU6-267P-201ENST00000516714 103 ntBASIC0.66□□□□□ -2.3
RFX2P48378 RNA5SP47-201ENST00000517230 109 ntBASIC0.66□□□□□ -2.3
RFX2P48378 MIR4668-201ENST00000582284 70 ntBASIC0.66□□□□□ -2.3
RFX2P48378 MIRLET7F1-201ENST00000362202 87 ntBASIC0.65□□□□□ -2.31
RFX2P48378 Y_RNA.4-201ENST00000362333 112 ntBASIC0.65□□□□□ -2.31
RFX2P48378 Y_RNA.17-201ENST00000362433 111 ntBASIC0.65□□□□□ -2.31
RFX2P48378 RNY1P10-201ENST00000363268 113 ntBASIC0.65□□□□□ -2.31
RFX2P48378 Y_RNA.191-201ENST00000363972 113 ntBASIC0.65□□□□□ -2.31
RFX2P48378 RNU4-45P-201ENST00000365469 141 ntBASIC0.65□□□□□ -2.31
RFX2P48378 Y_RNA.593-201ENST00000410292 98 ntBASIC0.65□□□□□ -2.31
RFX2P48378 RNU6-1053P-201ENST00000515930 101 ntBASIC0.65□□□□□ -2.31
RFX2P48378 RNA5SP94-201ENST00000516917 108 ntBASIC0.65□□□□□ -2.31
RFX2P48378 MIR6857-201ENST00000613267 93 ntBASIC0.65□□□□□ -2.31
RFX2P48378 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
RFX2P48378 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
RFX2P48378 SNORD115-27-201ENST00000364430 82 ntBASIC0.64□□□□□ -2.31
RFX2P48378 RNU6-716P-201ENST00000365621 103 ntBASIC0.64□□□□□ -2.31
RFX2P48378 MIR548L-201ENST00000408303 86 ntBASIC0.64□□□□□ -2.31
RFX2P48378 Y_RNA.620-201ENST00000411009 88 ntBASIC0.64□□□□□ -2.31
RFX2P48378 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.64□□□□□ -2.31
RFX2P48378 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.64□□□□□ -2.31
RFX2P48378 RNU7-13P-201ENST00000516413 62 ntBASIC0.64□□□□□ -2.31
RFX2P48378 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.64□□□□□ -2.31
RFX2P48378 AC067863.3-201ENST00000624172 122 ntBASIC0.64□□□□□ -2.31
RFX2P48378 SNORA36.1-201ENST00000363424 132 ntBASIC0.63□□□□□ -2.31
RFX2P48378 RNU6-219P-201ENST00000364728 107 ntBASIC0.63□□□□□ -2.31
RFX2P48378 RNU6-132P-201ENST00000383863 107 ntBASIC0.63□□□□□ -2.31
RFX2P48378 SNORD101-201ENST00000384027 73 ntBASIC0.63□□□□□ -2.31
RFX2P48378 Y_RNA.558-201ENST00000384685 113 ntBASIC0.63□□□□□ -2.31
RFX2P48378 MIR140-201ENST00000385282 100 ntBASIC0.63□□□□□ -2.31
RFX2P48378 Y_RNA.596-201ENST00000410462 109 ntBASIC0.63□□□□□ -2.31
RFX2P48378 SCARNA16.5-201ENST00000517114 183 ntBASIC0.63□□□□□ -2.31
RFX2P48378 MIR3973-201ENST00000579824 107 ntBASIC0.63□□□□□ -2.31
RFX2P48378 RNU6-664P-201ENST00000362381 107 ntBASIC0.62□□□□□ -2.31
RFX2P48378 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.62□□□□□ -2.31
RFX2P48378 RNU6-762P-201ENST00000517107 102 ntBASIC0.62□□□□□ -2.31
RFX2P48378 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.62□□□□□ -2.31
RFX2P48378 MIR4696-201ENST00000581431 70 ntBASIC0.62□□□□□ -2.31
RFX2P48378 MIR494-201ENST00000349529 81 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNU6-811P-201ENST00000384069 107 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNU6-110P-201ENST00000384508 104 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNA5SP292-201ENST00000390974 118 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNU6-321P-201ENST00000410912 106 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNA5SP227-201ENST00000516184 113 ntBASIC0.61□□□□□ -2.31
RFX2P48378 RNA5SP268-201ENST00000516828 124 ntBASIC0.61□□□□□ -2.31
RFX2P48378 MIR3064-201ENST00000581130 66 ntBASIC0.61□□□□□ -2.31
RFX2P48378 MIR3920-201ENST00000581751 86 ntBASIC0.61□□□□□ -2.31
RFX2P48378 MIR4679-1-201ENST00000637619 75 ntBASIC0.61□□□□□ -2.31
RFX2P48378 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.6□□□□□ -2.31
RFX2P48378 RNU6-633P-201ENST00000362612 103 ntBASIC0.6□□□□□ -2.31
RFX2P48378 Y_RNA.73-201ENST00000362910 113 ntBASIC0.6□□□□□ -2.31
RFX2P48378 Y_RNA.207-201ENST00000364142 106 ntBASIC0.6□□□□□ -2.31
RFX2P48378 RNU6-726P-201ENST00000364680 107 ntBASIC0.6□□□□□ -2.31
RFX2P48378 RNA5SP517-201ENST00000364724 117 ntBASIC0.6□□□□□ -2.31
RFX2P48378 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
RFX2P48378 RNU6-287P-201ENST00000516230 98 ntBASIC0.6□□□□□ -2.31
RFX2P48378 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.6□□□□□ -2.31
RFX2P48378 AC104996.3-201ENST00000590718 94 ntBASIC0.6□□□□□ -2.31
RFX2P48378 MTRNR2L2-201ENST00000604882 87 ntBASIC0.6□□□□□ -2.31
RFX2P48378 IGLL4P-201ENST00000614590 133 ntBASIC0.6□□□□□ -2.31
RFX2P48378 RNY1P1-201ENST00000364372 112 ntBASIC0.59□□□□□ -2.31
RFX2P48378 SNORD73B-201ENST00000364394 72 ntBASIC0.59□□□□□ -2.31
RFX2P48378 Y_RNA.239-201ENST00000364444 113 ntBASIC0.59□□□□□ -2.31
RFX2P48378 SNORD115-44-201ENST00000365391 82 ntBASIC0.59□□□□□ -2.31
RFX2P48378 RNU6-675P-201ENST00000384236 104 ntBASIC0.59□□□□□ -2.31
RFX2P48378 SNORA8.2-201ENST00000384372 139 ntBASIC0.59□□□□□ -2.31
RFX2P48378 Y_RNA.508-201ENST00000384502 114 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms