Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU7-106P-201ENST00000459514 67 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 MIR4711-201ENST00000578274 70 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 AC067863.3-201ENST00000624172 122 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 Y_RNA.57-201ENST00000362806 113 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 SNORD44.1-201ENST00000363202 61 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 RNU6-1081P-201ENST00000384537 107 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 MIR516A2-201ENST00000384888 90 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 MIR516A1-201ENST00000385033 90 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 SNORD41.1-201ENST00000391000 69 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 RNU6-1265P-201ENST00000516342 103 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 AC141557.1-201ENST00000540982 400 ntBASIC0.41□□□□□ -2.34
PTPN9P43378 Y_RNA.36-201ENST00000362602 112 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 Y_RNA.78-201ENST00000362970 110 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 RNU6-1125P-201ENST00000363601 107 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 RNU6-480P-201ENST00000384332 107 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 AL606753.1-201ENST00000427435 87 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 AC243829.6-201ENST00000612652 106 ntBASIC0.4□□□□□ -2.35
PTPN9P43378 SNORD36A-201ENST00000362874 73 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 SNORD114-26-201ENST00000363543 72 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 RNU4-36P-201ENST00000364294 144 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 SNORD45B-201ENST00000364617 72 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 Y_RNA.466-201ENST00000384294 113 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 RNU7-104P-201ENST00000459398 79 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 PVT1_3.1-201ENST00000620853 95 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 AL162376.1-201ENST00000624117 175 ntBASIC0.39□□□□□ -2.35
PTPN9P43378 RNU6-1163P-201ENST00000364516 107 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 RNU6-1327P-201ENST00000365302 105 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 Y_RNA.540-201ENST00000384638 111 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 RNU6-243P-201ENST00000391140 107 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 RNA5SP193-201ENST00000410353 107 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 RNU6-589P-201ENST00000516485 107 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 RN7SL793P-201ENST00000583259 296 ntBASIC0.38□□□□□ -2.35
PTPN9P43378 Y_RNA.163-201ENST00000363702 113 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 Y_RNA.221-201ENST00000364248 96 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 RNU6-524P-201ENST00000384270 107 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 MIR548L-201ENST00000408303 86 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 Y_RNA.601-201ENST00000410500 113 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 Y_RNA.629-201ENST00000411368 105 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.37□□□□□ -2.35
PTPN9P43378 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 AC010487.4-201ENST00000637027 61 ntBASIC0.37□□□□□ -2.35
PTPN9P43378 SNORD114-23-201ENST00000363536 72 ntBASIC0.36□□□□□ -2.35
PTPN9P43378 RNU6-1244P-201ENST00000363614 108 ntBASIC0.36□□□□□ -2.35
PTPN9P43378 SNORD115-44-201ENST00000365391 82 ntBASIC0.36□□□□□ -2.35
PTPN9P43378 Y_RNA.659-201ENST00000515994 113 ntBASIC0.36□□□□□ -2.35
PTPN9P43378 MIR6129-201ENST00000616087 109 ntBASIC0.36□□□□□ -2.35
PTPN9P43378 RNU6-716P-201ENST00000365621 103 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 VTRNA1-3-201ENST00000365645 89 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 RNU7-74P-201ENST00000459104 62 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 RNU7-13P-201ENST00000516413 62 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 RNA5SP480-201ENST00000516840 109 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 AC073869.9-201ENST00000641610 120 ntBASIC0.35□□□□□ -2.35
PTPN9P43378 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 Y_RNA.95-201ENST00000363079 95 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 MIR1302-5-201ENST00000408164 150 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 AC069271.1-201ENST00000445577 156 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 MIR3613-201ENST00000579844 87 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 MIR3920-201ENST00000581751 86 ntBASIC0.34□□□□□ -2.36
PTPN9P43378 SNORA19-201ENST00000384737 128 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 AC109327.2-201ENST00000448339 378 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 AC108740.1-201ENST00000498629 225 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 RNU6-904P-201ENST00000516206 101 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 Y_RNA.709-201ENST00000516952 92 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 MIR5706-201ENST00000579841 80 ntBASIC0.33□□□□□ -2.36
PTPN9P43378 RNU6-1113P-201ENST00000384348 107 ntBASIC0.32□□□□□ -2.36
PTPN9P43378 Y_RNA.96-201ENST00000363092 109 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 RNU6-509P-201ENST00000363519 107 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 MIR193B-201ENST00000384907 83 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 MIR181B2-201ENST00000385004 89 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 MIR6755-201ENST00000619993 66 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 TRDV1-202ENST00000621643 102 ntBASIC0.31□□□□□ -2.36
PTPN9P43378 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
PTPN9P43378 RNU6-106P-201ENST00000384405 107 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 RNY1P4-201ENST00000384595 115 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 RNU6-813P-201ENST00000384691 107 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 Y_RNA.648-201ENST00000459455 110 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 SCARNA23-201ENST00000516060 130 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 MTRNR2L2-201ENST00000604882 87 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 RNU6-86P-201ENST00000606534 107 ntBASIC0.3□□□□□ -2.36
PTPN9P43378 RNU6-269P-201ENST00000391077 97 ntBASIC0.29□□□□□ -2.36
PTPN9P43378 RNU6-466P-201ENST00000391224 103 ntBASIC0.29□□□□□ -2.36
PTPN9P43378 MIR4752-201ENST00000579672 72 ntBASIC0.29□□□□□ -2.36
PTPN9P43378 MIR548AI-201ENST00000579940 88 ntBASIC0.29□□□□□ -2.36
PTPN9P43378 RNU1-29P-201ENST00000606574 126 ntBASIC0.29□□□□□ -2.36
PTPN9P43378 RNA5SP62-201ENST00000363457 110 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 SNORA2A-201ENST00000383885 135 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 MIR617-201ENST00000385030 97 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 Y_RNA.596-201ENST00000410462 109 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 MIR1273G-201ENST00000577677 100 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 Y_RNA.818-201ENST00000618813 71 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 U2.22-201ENST00000636441 106 ntBASIC0.28□□□□□ -2.36
PTPN9P43378 SNORA9.1-201ENST00000362412 131 ntBASIC0.27□□□□□ -2.37
PTPN9P43378 RNU6-644P-201ENST00000391155 98 ntBASIC0.27□□□□□ -2.37
PTPN9P43378 RNU6-554P-201ENST00000410466 106 ntBASIC0.27□□□□□ -2.37
PTPN9P43378 RNU6-537P-201ENST00000517277 103 ntBASIC0.27□□□□□ -2.37
PTPN9P43378 AC069113.3-201ENST00000521019 150 ntBASIC0.27□□□□□ -2.37
PTPN9P43378 MIR4777-201ENST00000583710 86 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms