Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORD79.1-201ENST00000516069 84 ntBASIC1.39□□□□□ -2.19
COL6A1P12109 RNU6-65P-201ENST00000516332 98 ntBASIC1.39□□□□□ -2.19
COL6A1P12109 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
COL6A1P12109 Y_RNA.56-201ENST00000362798 112 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 SNORD115-27-201ENST00000364430 82 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 RNU6-364P-201ENST00000384387 107 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 Y_RNA.536-201ENST00000384621 113 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 Y_RNA.697-201ENST00000516776 113 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 RNA5SP404-201ENST00000517118 132 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 RNU7-156P-201ENST00000517214 74 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
COL6A1P12109 RNU4-32P-201ENST00000363404 141 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 Y_RNA.374-201ENST00000365606 101 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 SNORD12-201ENST00000391002 90 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 MIR938-201ENST00000401216 83 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 MIR1255A-201ENST00000408338 113 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 AC015818.7-201ENST00000428754 109 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 AC067940.1-201ENST00000458411 300 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 MIR4676-201ENST00000583078 72 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 MIR4536-1-201ENST00000583537 88 ntBASIC1.37□□□□□ -2.19
COL6A1P12109 Y_RNA.42-201ENST00000362660 108 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RNU6-524P-201ENST00000384270 107 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 MIR519A1-201ENST00000385257 85 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RNU7-85P-201ENST00000458851 63 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 snoU13.11-201ENST00000459219 104 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RNU7-106P-201ENST00000459514 67 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
COL6A1P12109 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL6A1P12109 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.35□□□□□ -2.19
COL6A1P12109 SNORD92-201ENST00000585078 85 ntBASIC1.35□□□□□ -2.19
COL6A1P12109 AC027335.2-201ENST00000624030 375 ntBASIC1.35□□□□□ -2.19
COL6A1P12109 MIR1-1-201ENST00000362147 71 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 Y_RNA.283-201ENST00000364798 112 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 RNU6-787P-201ENST00000384032 107 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 RNU6-811P-201ENST00000384069 107 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 MIR100-201ENST00000385259 80 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
COL6A1P12109 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 AC092628.1-201ENST00000436250 252 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 TRAJ51-201ENST00000504127 63 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 Y_RNA.809-201ENST00000516058 95 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 RNU6-977P-201ENST00000516411 103 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 AC138907.6-201ENST00000568401 126 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 AC138869.1-201ENST00000568623 124 ntBASIC1.34□□□□□ -2.19
COL6A1P12109 RNU6-652P-201ENST00000365488 107 ntBASIC1.33□□□□□ -2.2
COL6A1P12109 MIR548U-201ENST00000390728 81 ntBASIC1.33□□□□□ -2.2
COL6A1P12109 RNA5SP225-201ENST00000410874 135 ntBASIC1.33□□□□□ -2.2
COL6A1P12109 RNU7-195P-201ENST00000458793 62 ntBASIC1.33□□□□□ -2.2
COL6A1P12109 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.33□□□□□ -2.2
COL6A1P12109 Y_RNA.313-201ENST00000365095 103 ntBASIC1.32□□□□□ -2.2
COL6A1P12109 RNU1-119P-201ENST00000391122 165 ntBASIC1.32□□□□□ -2.2
COL6A1P12109 AC097635.1-201ENST00000450678 155 ntBASIC1.32□□□□□ -2.2
COL6A1P12109 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.32□□□□□ -2.2
COL6A1P12109 MIR5000-201ENST00000577717 103 ntBASIC1.32□□□□□ -2.2
COL6A1P12109 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.32□□□□□ -2.2
COL6A1P12109 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL6A1P12109 MIR373-201ENST00000362273 69 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 RNU6-1260P-201ENST00000362944 107 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 Y_RNA.316-201ENST00000365118 111 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 RNU6-535P-201ENST00000384722 107 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 RNU6-279P-201ENST00000391297 101 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 RNU7-102P-201ENST00000458948 62 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 RNU6-448P-201ENST00000517052 107 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.31□□□□□ -2.2
COL6A1P12109 AC068338.1-201ENST00000565567 176 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 AC140658.3-201ENST00000567603 271 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 MIR4804-201ENST00000581683 73 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 MIR4295-201ENST00000585286 85 ntBASIC1.31□□□□□ -2.2
COL6A1P12109 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL6A1P12109 RNU1-124P-201ENST00000363861 145 ntBASIC1.3□□□□□ -2.2
COL6A1P12109 AC087343.1-201ENST00000477341 475 ntBASIC1.3□□□□□ -2.2
COL6A1P12109 RNU7-153P-201ENST00000516455 62 ntBASIC1.3□□□□□ -2.2
COL6A1P12109 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
COL6A1P12109 RNU6-957P-201ENST00000363652 99 ntBASIC1.29□□□□□ -2.2
COL6A1P12109 SNORA25.13-201ENST00000516395 103 ntBASIC1.29□□□□□ -2.2
COL6A1P12109 RNA5SP395-201ENST00000516567 118 ntBASIC1.29□□□□□ -2.2
COL6A1P12109 MIR4796-201ENST00000580742 81 ntBASIC1.29□□□□□ -2.2
COL6A1P12109 AC104996.3-201ENST00000590718 94 ntBASIC1.29□□□□□ -2.2
COL6A1P12109 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
COL6A1P12109 RNU6-369P-201ENST00000362515 102 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RNU6-24P-201ENST00000384440 107 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RNU6-291P-201ENST00000384720 107 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 MIR520F-201ENST00000384824 87 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 MIR599-201ENST00000385069 95 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 MIR1827-201ENST00000408549 66 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 AC002429.1-201ENST00000437672 148 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RNU7-56P-201ENST00000458744 62 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 OR2A41P-201ENST00000473586 105 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RNU6-857P-201ENST00000515893 110 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RNU6-75P-201ENST00000515944 104 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 MIR4661-201ENST00000582720 75 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 RN7SL793P-201ENST00000583259 296 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 AL136317.1-201ENST00000612653 226 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 TRDV1-202ENST00000621643 102 ntBASIC1.28□□□□□ -2.2
COL6A1P12109 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.28□□□□□ -2.2
COL6A1P12109 MIR3064-201ENST00000581130 66 ntBASIC1.27□□□□□ -2.21
COL6A1P12109 AC008608.1-201ENST00000603910 127 ntBASIC1.27□□□□□ -2.21
COL6A1P12109 Y_RNA.491-201ENST00000384417 107 ntBASIC1.26□□□□□ -2.21
COL6A1P12109 SNORA18.5-201ENST00000516616 101 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms