Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
HOXA3O43365 Y_RNA.283-201ENST00000364798 112 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 RNA5SP173-201ENST00000364857 136 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 MIR599-201ENST00000385069 95 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 RNU6-466P-201ENST00000391224 103 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 AC097635.1-201ENST00000450678 155 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 AC022137.1-201ENST00000483735 151 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 AC002350.1-201ENST00000490759 375 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 AC025627.3-201ENST00000582078 182 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 MIR4452-201ENST00000583004 71 ntBASIC1.07□□□□□ -2.24
HOXA3O43365 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.07□□□□□ -2.24
HOXA3O43365 Y_RNA.32-201ENST00000362589 110 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 Y_RNA.174-201ENST00000363781 105 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 SNORD115-27-201ENST00000364430 82 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU6-1335P-201ENST00000365426 107 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU6-573P-201ENST00000383938 106 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU6-524P-201ENST00000384270 107 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU6-592P-201ENST00000411333 103 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 AC244505.6-201ENST00000452829 130 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU6-75P-201ENST00000515944 104 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNA5SP102-201ENST00000516865 106 ntBASIC1.06□□□□□ -2.24
HOXA3O43365 RNU4-32P-201ENST00000363404 141 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 RNA5SP117-201ENST00000365294 118 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 RNU6-497P-201ENST00000365316 104 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 MIR519C-201ENST00000385053 87 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 Y_RNA.611-201ENST00000410682 108 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 AC004223.1-201ENST00000479840 271 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 RNA5SP255-201ENST00000516370 107 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 MIR548BB-201ENST00000626714 66 ntBASIC1.05□□□□□ -2.24
HOXA3O43365 Y_RNA.221-201ENST00000364248 96 ntBASIC1.04□□□□□ -2.24
HOXA3O43365 MIR7-2-201ENST00000384970 110 ntBASIC1.04□□□□□ -2.24
HOXA3O43365 SNORA40.6-201ENST00000391153 128 ntBASIC1.04□□□□□ -2.24
HOXA3O43365 AL606490.4-201ENST00000423117 127 ntBASIC1.04□□□□□ -2.24
HOXA3O43365 MIR5588-201ENST00000581890 63 ntBASIC1.04□□□□□ -2.24
HOXA3O43365 RNU6-979P-201ENST00000383896 107 ntBASIC1.03□□□□□ -2.24
HOXA3O43365 RNU6-242P-201ENST00000384359 107 ntBASIC1.03□□□□□ -2.24
HOXA3O43365 MIR1236-201ENST00000408340 102 ntBASIC1.03□□□□□ -2.24
HOXA3O43365 MIR3660-201ENST00000584845 100 ntBASIC1.03□□□□□ -2.24
HOXA3O43365 TRDV1-202ENST00000621643 102 ntBASIC1.03□□□□□ -2.24
HOXA3O43365 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.03□□□□□ -2.24
HOXA3O43365 RNU7-153P-201ENST00000516455 62 ntBASIC1.02□□□□□ -2.25
HOXA3O43365 RNU6-1276P-201ENST00000365372 104 ntBASIC1.01□□□□□ -2.25
HOXA3O43365 Y_RNA.426-201ENST00000384068 113 ntBASIC1.01□□□□□ -2.25
HOXA3O43365 MIR644A-201ENST00000385262 94 ntBASIC1.01□□□□□ -2.25
HOXA3O43365 AC093729.1-201ENST00000513074 128 ntBASIC1.01□□□□□ -2.25
HOXA3O43365 RNA5SP61-201ENST00000516453 100 ntBASIC1.01□□□□□ -2.25
HOXA3O43365 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.01□□□□□ -2.25
HOXA3O43365 SNORD115-24-201ENST00000363528 82 ntBASIC1□□□□□ -2.25
HOXA3O43365 RNU6-132P-201ENST00000383863 107 ntBASIC1□□□□□ -2.25
HOXA3O43365 RNU6-811P-201ENST00000384069 107 ntBASIC1□□□□□ -2.25
HOXA3O43365 RNU6-939P-201ENST00000384634 107 ntBASIC1□□□□□ -2.25
HOXA3O43365 MIR573-201ENST00000384964 99 ntBASIC1□□□□□ -2.25
HOXA3O43365 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1□□□□□ -2.25
HOXA3O43365 AC006160.2-201ENST00000637708 154 ntBASIC1□□□□□ -2.25
HOXA3O43365 SNORD115-37-201ENST00000363768 82 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 SNORD114-22-201ENST00000365423 72 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 SNORD99-201ENST00000408612 74 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 RNU7-171P-201ENST00000459581 62 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 MIR3612-201ENST00000579753 87 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 MIR3064-201ENST00000581130 66 ntBASIC0.99□□□□□ -2.25
HOXA3O43365 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
HOXA3O43365 MIRLET7F1-201ENST00000362202 87 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 MIR758-201ENST00000390227 88 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 MIR548U-201ENST00000390728 81 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 RNA5SP292-201ENST00000390974 118 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 RNU6-1265P-201ENST00000516342 103 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 RNA5SP480-201ENST00000516840 109 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.98□□□□□ -2.25
HOXA3O43365 U6.100-201ENST00000636230 99 ntBASIC0.98□□□□□ -2.25
HOXA3O43365 RNU6-664P-201ENST00000362381 107 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 SNORD114-27-201ENST00000363766 70 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
HOXA3O43365 MIR150-201ENST00000385048 84 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 Y_RNA.596-201ENST00000410462 109 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 RNU6-469P-201ENST00000516253 101 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 SNORA18.5-201ENST00000516616 101 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 AC011195.1-201ENST00000578177 177 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 AC104996.3-201ENST00000590718 94 ntBASIC0.97□□□□□ -2.25
HOXA3O43365 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.97□□□□□ -2.25
HOXA3O43365 MIR96-201ENST00000362288 78 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 RNA5SP403-201ENST00000363598 108 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 Y_RNA.491-201ENST00000384417 107 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 RNU6-135P-201ENST00000516769 101 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 RNU7-161P-201ENST00000517289 62 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 MIR3678-201ENST00000578455 94 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 MIR4696-201ENST00000581431 70 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 MTRNR2L2-201ENST00000604882 87 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 MIR1245B-201ENST00000636115 69 ntBASIC0.96□□□□□ -2.26
HOXA3O43365 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.95□□□□□ -2.26
HOXA3O43365 Y_RNA.239-201ENST00000364444 113 ntBASIC0.95□□□□□ -2.26
HOXA3O43365 SNORD101-201ENST00000384027 73 ntBASIC0.95□□□□□ -2.26
HOXA3O43365 AC244098.3-201ENST00000424803 96 ntBASIC0.95□□□□□ -2.26
HOXA3O43365 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.95□□□□□ -2.26
HOXA3O43365 SNORA25.13-201ENST00000516395 103 ntBASIC0.95□□□□□ -2.26
HOXA3O43365 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.94□□□□□ -2.26
HOXA3O43365 Y_RNA.219-201ENST00000364232 113 ntBASIC0.94□□□□□ -2.26
HOXA3O43365 SNORD28-201ENST00000384706 75 ntBASIC0.94□□□□□ -2.26
HOXA3O43365 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
HOXA3O43365 Y_RNA.607-201ENST00000410597 98 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms