Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC087741.2-201ENST00000619415 172 ntBASIC-0.12□□□□□ -2.43
LHX3Q9UBR4 AC021753.1-201ENST00000635724 168 ntBASIC-0.12□□□□□ -2.43
LHX3Q9UBR4 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 MIR34C-201ENST00000384831 77 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 U7.6-201ENST00000610841 64 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 AC073869.9-201ENST00000641610 120 ntBASIC-0.13□□□□□ -2.43
LHX3Q9UBR4 RNU6-170P-201ENST00000362832 104 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 RNU6-929P-201ENST00000384429 107 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 SNORA81.3-201ENST00000517283 198 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 MIR548AD-201ENST00000584780 82 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 uc_338.28-201ENST00000612082 187 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 AC004792.1-201ENST00000614523 137 ntBASIC-0.14□□□□□ -2.43
LHX3Q9UBR4 SNORD116-18-201ENST00000383961 92 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 MT-TG-201ENST00000387429 68 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 SNORD110-201ENST00000408189 75 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 AC006210.1-201ENST00000424882 111 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 RNU7-106P-201ENST00000459514 67 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 RNU6-521P-201ENST00000516663 105 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 NAMPTP3-201ENST00000569273 224 ntBASIC-0.15□□□□□ -2.43
LHX3Q9UBR4 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNU6-524P-201ENST00000384270 107 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 MIR519A1-201ENST00000385257 85 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 MIR513C-201ENST00000401352 84 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNA5SP163-201ENST00000410304 99 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNA5SP484-201ENST00000458857 111 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNU7-159P-201ENST00000459284 62 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNU7-13P-201ENST00000516413 62 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNU6-850P-201ENST00000516934 103 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 MIR3920-201ENST00000581751 86 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 MIR4677-201ENST00000584153 80 ntBASIC-0.16□□□□□ -2.44
LHX3Q9UBR4 RNA5SP98-201ENST00000363158 137 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 SNORA32.1-201ENST00000364514 115 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 RNU6-571P-201ENST00000384128 107 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 MIR1263-201ENST00000408324 86 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 RN7SKP19-201ENST00000516016 252 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 MIR3163-201ENST00000581592 73 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 MIR3925-201ENST00000584674 77 ntBASIC-0.17□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 RNU6-509P-201ENST00000363519 107 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 RNU6-756P-201ENST00000383997 107 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 MIR5589-201ENST00000579442 60 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 MIR1255B1-201ENST00000636325 63 ntBASIC-0.18□□□□□ -2.44
LHX3Q9UBR4 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 SNORD115-19-201ENST00000363098 82 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 SNORD115-18-201ENST00000363293 82 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 SNORD115-17-201ENST00000364612 82 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 MIR516A2-201ENST00000384888 90 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 MIR516A1-201ENST00000385033 90 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 MIR759-201ENST00000390224 91 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 HMGN2P22-201ENST00000427588 175 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 AP001328.1-201ENST00000528550 176 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.19□□□□□ -2.44
LHX3Q9UBR4 RNU6-161P-201ENST00000363051 106 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 RNU6-804P-201ENST00000384286 107 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 MIR1265-201ENST00000408444 86 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 MIR1912-201ENST00000410389 80 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 MTND5P40-201ENST00000559945 246 ntBASIC-0.2□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 RNU6-647P-201ENST00000364243 107 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 SNORD38.2-201ENST00000384470 69 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 RNU6-735P-201ENST00000410612 107 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 SNORA7.5-201ENST00000410672 110 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 RNU6-394P-201ENST00000410735 107 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 RNU7-165P-201ENST00000458864 60 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 MIR1295B-201ENST00000636144 60 ntBASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.21□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 MIR214-201ENST00000385214 110 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 AC104692.1-201ENST00000472406 90 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 MIR548X2-201ENST00000579776 100 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 MIR4636-201ENST00000582271 80 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 AC084368.1-201ENST00000620935 65 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.22□□□□□ -2.44
LHX3Q9UBR4 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 RNU7-74P-201ENST00000459104 62 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 MIR3144-201ENST00000579460 79 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 MIR6514-201ENST00000622549 70 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 AP001340.1-201ENST00000624405 217 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 AL512310.12-203ENST00000640543 90 ntBASIC-0.23□□□□□ -2.45
LHX3Q9UBR4 RNU1-141P-201ENST00000364623 158 ntBASIC-0.24□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 224.7 ms