Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MIR4694-201ENST00000578534 80 ntBASIC0.52□□□□□ -2.33
SIX2Q9NPC8 RNU6-170P-201ENST00000362832 104 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 Y_RNA.323-201ENST00000365157 109 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 RNU6-1056P-201ENST00000383996 107 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 MIR635-201ENST00000384830 98 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 MIR577-201ENST00000385196 96 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.51□□□□□ -2.33
SIX2Q9NPC8 AC098934.3-201ENST00000430450 190 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 AC244505.6-201ENST00000452829 130 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 RNU6-850P-201ENST00000516934 103 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 MIR6129-201ENST00000616087 109 ntBASIC0.51□□□□□ -2.33
SIX2Q9NPC8 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.51□□□□□ -2.33
SIX2Q9NPC8 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
SIX2Q9NPC8 RNU6-1107P-201ENST00000364817 104 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 RNU6-1081P-201ENST00000384537 107 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 Y_RNA.567-201ENST00000384736 106 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 MIR489-201ENST00000384923 84 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 MIR548G-201ENST00000408442 89 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.5□□□□□ -2.33
SIX2Q9NPC8 MTND5P40-201ENST00000559945 246 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 MIR4639-201ENST00000584938 69 ntBASIC0.5□□□□□ -2.33
SIX2Q9NPC8 RNU6-832P-201ENST00000363319 107 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 SNORA36.1-201ENST00000363424 132 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 Y_RNA.273-201ENST00000364703 102 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 SNORD28-201ENST00000384706 75 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 MIR519A1-201ENST00000385257 85 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 SNORD63B-201ENST00000411005 70 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 SPINT5P-201ENST00000448174 155 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 AC097635.1-201ENST00000450678 155 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 RNU6-90P-201ENST00000606352 106 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 MIR7111-201ENST00000619751 72 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 AC092634.7-201ENST00000621022 103 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 U2.22-201ENST00000636441 106 ntBASIC0.49□□□□□ -2.33
SIX2Q9NPC8 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
SIX2Q9NPC8 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
SIX2Q9NPC8 RNY3P2-201ENST00000362918 102 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 RNU6-1099P-201ENST00000363533 107 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 RNU6-1229P-201ENST00000364295 107 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 Y_RNA.342-201ENST00000365352 113 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 RNU6-1014P-201ENST00000383940 103 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 RNA5SP47-201ENST00000517230 109 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 AC018659.1-201ENST00000551083 169 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 AC096720.1-201ENST00000604441 183 ntBASIC0.48□□□□□ -2.33
SIX2Q9NPC8 SNORD115-24-201ENST00000363528 82 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 Y_RNA.173-201ENST00000363776 113 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 RNA5SP517-201ENST00000364724 117 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.47□□□□□ -2.33
SIX2Q9NPC8 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 RNU6-589P-201ENST00000516485 107 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 SCARNA16.5-201ENST00000517114 183 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 uc_338.17-201ENST00000619633 179 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 MIR6515-201ENST00000619843 57 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 AC244669.1-204ENST00000621564 178 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.47□□□□□ -2.33
SIX2Q9NPC8 SNORA8.2-201ENST00000384372 139 ntBASIC0.46□□□□□ -2.34
SIX2Q9NPC8 MIR599-201ENST00000385069 95 ntBASIC0.46□□□□□ -2.34
SIX2Q9NPC8 RNU7-195P-201ENST00000458793 62 ntBASIC0.46□□□□□ -2.34
SIX2Q9NPC8 RNA5SP121-201ENST00000516537 101 ntBASIC0.46□□□□□ -2.34
SIX2Q9NPC8 MIR6828-201ENST00000636181 60 ntBASIC0.46□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.629-201ENST00000411368 105 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 RNU7-106P-201ENST00000459514 67 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.809-201ENST00000516058 95 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 RN7SKP12-201ENST00000516275 143 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 RNU6-229P-201ENST00000516614 102 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.45□□□□□ -2.34
SIX2Q9NPC8 AC141557.1-201ENST00000540982 400 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 MIR3613-201ENST00000579844 87 ntBASIC0.45□□□□□ -2.34
SIX2Q9NPC8 RNA5SP347-201ENST00000362445 119 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 RNU6-1260P-201ENST00000362944 107 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 RNU6-1163P-201ENST00000364516 107 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 MIR516A2-201ENST00000384888 90 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 MIR516A1-201ENST00000385033 90 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 SNORA40.8-201ENST00000411034 126 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 RNA5SP268-201ENST00000516828 124 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.709-201ENST00000516952 92 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 RNU7-161P-201ENST00000517289 62 ntBASIC0.44□□□□□ -2.34
SIX2Q9NPC8 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.57-201ENST00000362806 113 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 RNU6-1290P-201ENST00000362957 109 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 SNORD118-201ENST00000363593 134 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 RNA5SP403-201ENST00000363598 108 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 MIR598-201ENST00000384868 97 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 MIR518A1-201ENST00000385068 85 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 SNORD71-201ENST00000411292 86 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.659-201ENST00000515994 113 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 SNORA25.18-201ENST00000607153 114 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 AC091304.10-201ENST00000641554 121 ntBASIC0.43□□□□□ -2.34
SIX2Q9NPC8 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.42□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.163-201ENST00000363702 113 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 RNU4-36P-201ENST00000364294 144 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.291-201ENST00000364886 113 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 RNU6-1325P-201ENST00000364905 105 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 MIR548AI-201ENST00000579940 88 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 MIR7107-201ENST00000611489 80 ntBASIC0.42□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.10-201ENST00000362371 110 ntBASIC0.41□□□□□ -2.34
SIX2Q9NPC8 Y_RNA.78-201ENST00000362970 110 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms