Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SNORA75.1-201ENST00000391130 148 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 RNU6-861P-201ENST00000516745 106 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 MIR3920-201ENST00000581751 86 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 AC141273.2-201ENST00000618989 130 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 MIR34C-201ENST00000384831 77 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 MIR519A1-201ENST00000385257 85 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 MIR5589-201ENST00000579442 60 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 AC084368.1-201ENST00000620935 65 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 MIR6514-201ENST00000622549 70 ntBASIC-0.37□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 RNU6-571P-201ENST00000384128 107 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 MIR1912-201ENST00000410389 80 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 HMGN2P22-201ENST00000427588 175 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 RNU7-74P-201ENST00000459104 62 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 AC021753.1-201ENST00000635724 168 ntBASIC-0.38□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.39□□□□□ -2.47
CHMP4AQ9BY43 RNU7-106P-201ENST00000459514 67 ntBASIC-0.39□□□□□ -2.47
CHMP4AQ9BY43 RNU6-850P-201ENST00000516934 103 ntBASIC-0.39□□□□□ -2.47
CHMP4AQ9BY43 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.4□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.4□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.4□□□□□ -2.47
CHMP4AQ9BY43 AC087741.2-201ENST00000619415 172 ntBASIC-0.4□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 RNU6-460P-201ENST00000391158 108 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 RNU6-521P-201ENST00000516663 105 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 RNU6-180P-201ENST00000516697 61 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 MIR4645-201ENST00000583158 77 ntBASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.41□□□□□ -2.48
CHMP4AQ9BY43 RNU6-151P-201ENST00000364158 107 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 RNU6-915P-201ENST00000364943 103 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 SNORD114-12-201ENST00000365400 75 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 SNORD38.2-201ENST00000384470 69 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 MIR106A-201ENST00000384870 81 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 MIR516B1-201ENST00000385211 90 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 MTND5P40-201ENST00000559945 246 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 MIR3163-201ENST00000581592 73 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 MIR4636-201ENST00000582271 80 ntBASIC-0.42□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 MIR516A2-201ENST00000384888 90 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 MIR516A1-201ENST00000385033 90 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 SNORA25.13-201ENST00000516395 103 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.43□□□□□ -2.48
CHMP4AQ9BY43 MIR759-201ENST00000390224 91 ntBASIC-0.44□□□□□ -2.48
CHMP4AQ9BY43 MIR1265-201ENST00000408444 86 ntBASIC-0.44□□□□□ -2.48
CHMP4AQ9BY43 RNU7-120P-201ENST00000459334 63 ntBASIC-0.44□□□□□ -2.48
CHMP4AQ9BY43 MIR3121-201ENST00000579680 77 ntBASIC-0.44□□□□□ -2.48
CHMP4AQ9BY43 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.44□□□□□ -2.48
CHMP4AQ9BY43 RNU6-682P-201ENST00000363843 106 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 RNU1-141P-201ENST00000364623 158 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 MT-TI-201ENST00000387365 69 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 RNU6-138P-201ENST00000515952 107 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 MIR4802-201ENST00000581881 80 ntBASIC-0.45□□□□□ -2.48
CHMP4AQ9BY43 RNU6-379P-201ENST00000363813 104 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 RNU6-200P-201ENST00000364743 107 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 IGKV1-22-201ENST00000524313 326 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 CR383656.4-201ENST00000546909 122 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 MIR4473-201ENST00000583731 91 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 AP001180.6-201ENST00000584918 159 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 AL670379.3-201ENST00000605040 251 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.46□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 MIR513C-201ENST00000401352 84 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 RNU7-197P-201ENST00000458836 62 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 SNORD4A-201ENST00000459174 72 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 RNU6-388P-201ENST00000517012 105 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 RNU6-389P-201ENST00000517048 105 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.47□□□□□ -2.48
CHMP4AQ9BY43 SNORD115-19-201ENST00000363098 82 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 SNORD115-18-201ENST00000363293 82 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 SNORD115-17-201ENST00000364612 82 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 RNU6-46P-201ENST00000383860 107 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 MIR1263-201ENST00000408324 86 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 MIR1255B1-201ENST00000636325 63 ntBASIC-0.48□□□□□ -2.49
CHMP4AQ9BY43 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 SNORA18.1-201ENST00000363418 128 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 SNORD114-28-201ENST00000363610 72 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 MIR876-201ENST00000401147 81 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 SNORA7.5-201ENST00000410672 110 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 AC074198.2-201ENST00000508153 258 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 RN7SKP19-201ENST00000516016 252 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 MIR4719-201ENST00000585233 84 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 MIR8064-201ENST00000612863 90 ntBASIC-0.49□□□□□ -2.49
CHMP4AQ9BY43 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.5□□□□□ -2.49
CHMP4AQ9BY43 AC099654.10-201ENST00000640395 161 ntBASIC-0.5□□□□□ -2.49
CHMP4AQ9BY43 AL512310.12-203ENST00000640543 90 ntBASIC-0.5□□□□□ -2.49
CHMP4AQ9BY43 SNORD115-44-201ENST00000365391 82 ntBASIC-0.51□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms