Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-358P-201ENST00000516564 75 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 IGHVII-40-1-201ENST00000517316 58 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 U2.1-201ENST00000618978 145 ntBASIC-2.9□□□□□ -2.87
SCAPERQ9BY12 SNORD38.2-201ENST00000384470 69 ntBASIC-2.91□□□□□ -2.87
SCAPERQ9BY12 MIR451A-201ENST00000385059 72 ntBASIC-2.91□□□□□ -2.87
SCAPERQ9BY12 MRPS35P2-201ENST00000508242 191 ntBASIC-2.91□□□□□ -2.87
SCAPERQ9BY12 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-2.91□□□□□ -2.87
SCAPERQ9BY12 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.404-201ENST00000383978 102 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.558-201ENST00000384685 113 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 MIR628-201ENST00000385229 95 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 MTND5P5-201ENST00000503764 376 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 SEPT14P8-201ENST00000508026 178 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 MIR466-201ENST00000580653 84 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 NBR2-204ENST00000587322 63 ntBASIC-2.92□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.199-201ENST00000364014 102 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 MIR1255B2-201ENST00000408618 67 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.633-201ENST00000459107 95 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 RNU6-1238P-201ENST00000517215 102 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.257-201ENST00000364596 102 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 AC073869.6-201ENST00000640656 341 ntBASIC-2.93□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.173-201ENST00000363776 113 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.418-201ENST00000384029 102 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 MIR34C-201ENST00000384831 77 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.693-201ENST00000516641 110 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 AL162413.1-201ENST00000603198 110 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 SNORD113-5-201ENST00000607261 78 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 PISRT1.1-201ENST00000616930 107 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 AC022079.1-201ENST00000621546 602 ntBASIC-2.94□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.556-201ENST00000384677 113 ntBASIC-2.95□□□□□ -2.88
SCAPERQ9BY12 MTND1P1-201ENST00000445453 368 ntBASIC-2.95□□□□□ -2.88
SCAPERQ9BY12 MTND2P31-201ENST00000512602 616 ntBASIC-2.95□□□□□ -2.88
SCAPERQ9BY12 AC103591.3-201ENST00000608684 209 ntBASIC-2.95□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.222-201ENST00000364264 102 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 RNU5A-2P-201ENST00000384337 116 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 MT-TT-201ENST00000387460 66 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 MTND3P10-201ENST00000450967 341 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 RNU6-264P-201ENST00000517134 104 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 MIR4748-201ENST00000578076 82 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 FAS-AS1.1-201ENST00000615327 126 ntBASIC-2.96□□□□□ -2.88
SCAPERQ9BY12 RNU6-1272P-201ENST00000362776 107 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 Y_RNA.286-201ENST00000364813 102 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 RNU6-937P-201ENST00000384325 106 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 MIR624-201ENST00000385217 97 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 AP002392.1-201ENST00000537692 208 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 AC084782.3-201ENST00000612282 578 ntBASIC-2.97□□□□□ -2.88
SCAPERQ9BY12 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 RNU6-690P-201ENST00000365242 106 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.526-201ENST00000384572 110 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 SNORA79-201ENST00000408376 140 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 RNU6-1052P-201ENST00000411398 104 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 RNU6-719P-201ENST00000516671 104 ntBASIC-2.98□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.99□□□□□ -2.89
SCAPERQ9BY12 RNU6-616P-201ENST00000384353 107 ntBASIC-2.99□□□□□ -2.89
SCAPERQ9BY12 RNU6-908P-201ENST00000410160 94 ntBASIC-2.99□□□□□ -2.89
SCAPERQ9BY12 AL512360.1-201ENST00000555346 234 ntBASIC-2.99□□□□□ -2.89
SCAPERQ9BY12 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-2.99□□□□□ -2.89
SCAPERQ9BY12 RNU6-774P-201ENST00000363238 107 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 RNU6-990P-201ENST00000364385 104 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.248-201ENST00000364501 109 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.813-201ENST00000364639 102 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 AL731563.1-201ENST00000442202 214 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 RN7SKP298-201ENST00000515950 94 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.682-201ENST00000516457 100 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 RNU6-1213P-201ENST00000517075 94 ntBASIC-3□□□□□ -2.89
SCAPERQ9BY12 RNU6-495P-201ENST00000362995 107 ntBASIC-3.01□□□□□ -2.89
SCAPERQ9BY12 RNU6-1281P-201ENST00000516223 105 ntBASIC-3.01□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 AC138393.2-201ENST00000414742 246 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 CYP3A54P-201ENST00000566950 75 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 RNU6-258P-201ENST00000390884 101 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.599-201ENST00000410489 109 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 RNU6-1314P-201ENST00000517139 104 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 AC090617.10-201ENST00000624308 134 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 AC138305.3-201ENST00000624988 240 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 AP000720.1-201ENST00000625091 483 ntBASIC-3.02□□□□□ -2.89
SCAPERQ9BY12 Y_RNA.176-201ENST00000363815 109 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 SNORA75-201ENST00000384158 137 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 SNORD116-25-201ENST00000516517 92 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 DLEU2_3.1-201ENST00000620005 73 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 MIR6863-201ENST00000636112 90 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 MIR1321-201ENST00000637766 79 ntBASIC-3.03□□□□□ -2.89
SCAPERQ9BY12 RNU6-451P-201ENST00000362921 107 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 SNORA15B-2-201ENST00000384058 135 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 SNORA15B-1-201ENST00000384334 135 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.582-201ENST00000391023 95 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 AC048344.4-201ENST00000619744 527 ntBASIC-3.04□□□□□ -2.9
SCAPERQ9BY12 RNY3P3-201ENST00000363816 102 ntBASIC-3.05□□□□□ -2.9
SCAPERQ9BY12 RNU7-164P-201ENST00000459221 62 ntBASIC-3.05□□□□□ -2.9
SCAPERQ9BY12 RNU6-120P-201ENST00000516077 103 ntBASIC-3.05□□□□□ -2.9
SCAPERQ9BY12 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-3.05□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.143-201ENST00000363520 106 ntBASIC-3.06□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 1130.9 ms