Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORA25.8-201ENST00000364831 128 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 MIR1323-201ENST00000408090 73 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 MIR1304-201ENST00000408243 91 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 RNU7-95P-201ENST00000459222 64 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 Y_RNA.676-201ENST00000516393 96 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 RNU6-531P-201ENST00000516694 104 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 MIR7974-201ENST00000615835 79 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 AC027335.2-201ENST00000624030 375 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 RNU1-36P-201ENST00000365130 165 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 Y_RNA.508-201ENST00000384502 114 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 SNORA75.2-201ENST00000391138 150 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 SNORA75.3-201ENST00000391231 150 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 MIR889-201ENST00000401280 79 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 AL450471.1-201ENST00000447509 127 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 MIR18B-201ENST00000454574 71 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 snoU13.21-201ENST00000459368 105 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.44□□□□□ -2.18
CLIP3Q96DZ5 RNA5SP292-201ENST00000390974 118 ntBASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 RNU6-129P-201ENST00000391022 107 ntBASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 RNU6-1254P-201ENST00000391266 104 ntBASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 RNU7-21P-201ENST00000459430 62 ntBASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 ZNF209P-201ENST00000593450 2304 ntBASIC1.43□□□□□ -2.18
CLIP3Q96DZ5 Y_RNA.283-201ENST00000364798 112 ntBASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 RNU6-132P-201ENST00000383863 107 ntBASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 SNORA72.6-201ENST00000384520 129 ntBASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 AL354695.1-201ENST00000427935 228 ntBASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.42□□□□□ -2.18
CLIP3Q96DZ5 RNU4-58P-201ENST00000363192 141 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 SNORD93-201ENST00000408813 74 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 SNORD63B-201ENST00000411005 70 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 RNU7-90P-201ENST00000459216 62 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 RNU6-557P-201ENST00000516842 110 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 MIR4796-201ENST00000580742 81 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 AC145423.2-201ENST00000610631 239 ntBASIC1.41□□□□□ -2.18
CLIP3Q96DZ5 MIR337-201ENST00000362281 93 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.330-201ENST00000365230 109 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 MIR618-201ENST00000385287 98 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 SNORD100-201ENST00000408573 76 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 RNU6-321P-201ENST00000410912 106 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 TRAJ51-201ENST00000504127 63 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 TRMT112P2-201ENST00000512910 132 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 RNU6-1194P-201ENST00000516208 104 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 RNU7-40P-201ENST00000516397 64 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 MIR3064-201ENST00000581130 66 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 MIR4536-1-201ENST00000583537 88 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 MIR4781-201ENST00000585250 76 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 AL359821.1-201ENST00000605519 182 ntBASIC1.4□□□□□ -2.19
CLIP3Q96DZ5 SNORA63.2-201ENST00000362603 126 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 RNU6-957P-201ENST00000363652 99 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 RNU6-811P-201ENST00000384069 107 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 RNU6-939P-201ENST00000384634 107 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 MIR519A1-201ENST00000385257 85 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 RNU6-243P-201ENST00000391140 107 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 RNU7-185P-201ENST00000459215 60 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 AC139453.2-201ENST00000487255 133 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 SNORA18.5-201ENST00000516616 101 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.788-201ENST00000622394 112 ntBASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CLIP3Q96DZ5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 MIRLET7A1-201ENST00000362295 80 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 RNU6-403P-201ENST00000363163 104 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 MIR19B1-201ENST00000384829 87 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 MIR520H-201ENST00000385126 88 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 AC002429.1-201ENST00000437672 148 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 RNU6-523P-201ENST00000516304 54 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 RNA5SP404-201ENST00000517118 132 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 AC036111.3-201ENST00000526389 112 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 MIR4421-201ENST00000578133 69 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 AC104996.3-201ENST00000590718 94 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 AC013244.2-201ENST00000603396 103 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 AL157834.3-201ENST00000615543 103 ntBASIC1.38□□□□□ -2.19
CLIP3Q96DZ5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.13-201ENST00000362403 112 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 RNU6-53P-201ENST00000365367 106 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 SNORD90-201ENST00000391145 111 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 SNORD83.1-201ENST00000411362 77 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 MIR6082-201ENST00000613604 109 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 AC023934.1-201ENST00000574529 2389 ntBASIC1.37□□□□□ -2.19
CLIP3Q96DZ5 RNU1-124P-201ENST00000363861 145 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.532-201ENST00000384590 113 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.536-201ENST00000384621 113 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 AL606490.4-201ENST00000423117 127 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 AC015818.7-201ENST00000428754 109 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 AC073261.1-201ENST00000429409 121 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 RNU7-195P-201ENST00000458793 62 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 SNORD92-201ENST00000585078 85 ntBASIC1.36□□□□□ -2.19
CLIP3Q96DZ5 MIRLET7F1-201ENST00000362202 87 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.42-201ENST00000362660 108 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 RNU6-161P-201ENST00000363051 106 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 SNORD113.3-201ENST00000364630 78 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 RNU6-686P-201ENST00000364839 107 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.35□□□□□ -2.19
CLIP3Q96DZ5 Y_RNA.565-201ENST00000384719 101 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms