Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.48□□□□□ -2.49
FOXA1P55317 RNU6-850P-201ENST00000516934 103 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 MIR6844-201ENST00000637122 62 ntBASIC-0.48□□□□□ -2.49
FOXA1P55317 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 Y_RNA.47-201ENST00000362697 108 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 RNU6-30P-201ENST00000384561 107 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 MIR516A2-201ENST00000384888 90 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 MIR516A1-201ENST00000385033 90 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 MIR196A2-201ENST00000385189 110 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 RNU6-918P-201ENST00000391219 106 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 AL603914.1-201ENST00000401964 204 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 RNY4P20-201ENST00000516678 93 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.49□□□□□ -2.49
FOXA1P55317 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 RNU6-309P-201ENST00000364573 106 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 SNORD115-44-201ENST00000365391 82 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 SNORD18B-201ENST00000365659 72 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 RNU6-1160P-201ENST00000384546 104 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 MIR34C-201ENST00000384831 77 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 AL117187.1-201ENST00000555482 181 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 MIR4460-201ENST00000577862 86 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 AL590491.3-201ENST00000610731 82 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 FTX_2.1-201ENST00000618816 94 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 AC087741.2-201ENST00000619415 172 ntBASIC-0.5□□□□□ -2.49
FOXA1P55317 SNORD114-11-201ENST00000363738 75 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 RNY1P11-201ENST00000363759 113 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 SNORD114-29-201ENST00000364819 70 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 SNORA32.3-201ENST00000384772 121 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 MIR2113-201ENST00000459007 91 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 MIR3646-201ENST00000578301 84 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 MIR548AE1-201ENST00000583292 70 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 AL137067.1-201ENST00000615933 120 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 MIR548AZ-201ENST00000616567 95 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 AL627230.5-201ENST00000619807 58 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 uc_338.36-201ENST00000622331 158 ntBASIC-0.51□□□□□ -2.49
FOXA1P55317 RNU6-312P-201ENST00000364629 107 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 SNORA51.5-201ENST00000384126 131 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 AC108081.1-201ENST00000604358 221 ntBASIC-0.52□□□□□ -2.49
FOXA1P55317 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU4-84P-201ENST00000364200 139 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 MIR539-201ENST00000365690 78 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU6-47P-201ENST00000383866 107 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU6-154P-201ENST00000384306 106 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU6-287P-201ENST00000516230 98 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU4-71P-201ENST00000516258 113 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU6-175P-201ENST00000516896 107 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 AC008737.2-201ENST00000599446 118 ntBASIC-0.53□□□□□ -2.49
FOXA1P55317 RNU6-480P-201ENST00000384332 107 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 MIR606-201ENST00000384851 96 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 RNU6-284P-201ENST00000411105 106 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 AC114755.3-201ENST00000481111 251 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 RNU6-521P-201ENST00000516663 105 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 RNU7-6P-201ENST00000516845 62 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 MIR3658-201ENST00000636291 56 ntBASIC-0.54□□□□□ -2.5
FOXA1P55317 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 SNORD38.2-201ENST00000384470 69 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 MT-TY-201ENST00000387409 66 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
FOXA1P55317 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 MIR548AX-201ENST00000580117 73 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 MIR4432-201ENST00000581823 84 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 MIR3128-201ENST00000581957 66 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.55□□□□□ -2.5
FOXA1P55317 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 RNU6-455P-201ENST00000384681 107 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 SNORD37.2-201ENST00000391075 66 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 AL161932.1-201ENST00000437408 146 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 AC074198.2-201ENST00000508153 258 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 TRDV1-202ENST00000621643 102 ntBASIC-0.56□□□□□ -2.5
FOXA1P55317 SNORD115-19-201ENST00000363098 82 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 SNORD115-18-201ENST00000363293 82 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 SNORD115-17-201ENST00000364612 82 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 MT-TI-201ENST00000387365 69 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 RNU6-239P-201ENST00000390990 99 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 RNA5SP66-201ENST00000517178 101 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 RNU6-111P-201ENST00000517179 105 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 170.9 ms