Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.163-201ENST00000363702 113 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 RNU6-106P-201ENST00000384405 107 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 SNORD38.2-201ENST00000384470 69 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 AC109327.2-201ENST00000448339 378 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 RNU6-469P-201ENST00000516253 101 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 RNU6-795P-201ENST00000516323 103 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 RNA5SP94-201ENST00000516917 108 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 MIR548H5-201ENST00000580314 60 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 RNU6-90P-201ENST00000606352 106 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 Y_RNA.174-201ENST00000363781 105 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 Y_RNA.221-201ENST00000364248 96 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 RNU6-1163P-201ENST00000364516 107 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 RNU6-215P-201ENST00000365169 102 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 RNU6-571P-201ENST00000384128 107 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 MIR1287-201ENST00000408492 90 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 MIR1276-201ENST00000408707 83 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.56□□□□□ -2.32
HOXA1P49639 AL078603.1-201ENST00000603824 313 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 AL590095.2-201ENST00000604136 117 ntBASIC0.56□□□□□ -2.32
HOXA1P49639 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HOXA1P49639 MIR450A1-201ENST00000362262 91 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 Y_RNA.57-201ENST00000362806 113 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 SNORD115-24-201ENST00000363528 82 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 Y_RNA.173-201ENST00000363776 113 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNU1-93P-201ENST00000364704 169 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNA5SP517-201ENST00000364724 117 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 Y_RNA.377-201ENST00000365644 108 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 Y_RNA.467-201ENST00000384297 102 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNU6-110P-201ENST00000384508 104 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 MIR599-201ENST00000385069 95 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNU6-109P-201ENST00000516364 107 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNU6-184P-201ENST00000516514 107 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 RNU6-86P-201ENST00000606534 107 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 MIR6835-201ENST00000621552 64 ntBASIC0.55□□□□□ -2.32
HOXA1P49639 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.55□□□□□ -2.32
HOXA1P49639 MIR373-201ENST00000362273 69 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 Y_RNA.226-201ENST00000364337 114 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 Y_RNA.342-201ENST00000365352 113 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 RNU6-44P-201ENST00000384045 107 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 MIR590-201ENST00000385008 97 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 AL161932.1-201ENST00000437408 146 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.54□□□□□ -2.32
HOXA1P49639 AC138907.6-201ENST00000568401 126 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 AC138869.1-201ENST00000568623 124 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 MIR4452-201ENST00000583004 71 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 SNORA25.18-201ENST00000607153 114 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 AC012531.4-201ENST00000616509 177 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 AC244669.1-204ENST00000621564 178 ntBASIC0.54□□□□□ -2.32
HOXA1P49639 SNORD28-201ENST00000384706 75 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.53□□□□□ -2.32
HOXA1P49639 AC244505.6-201ENST00000452829 130 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 Y_RNA.809-201ENST00000516058 95 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 RNU6-904P-201ENST00000516206 101 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 RNU4-54P-201ENST00000516428 129 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 RNU7-161P-201ENST00000517289 62 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 AC096720.1-201ENST00000604441 183 ntBASIC0.53□□□□□ -2.32
HOXA1P49639 RNU6-1229P-201ENST00000364295 107 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 SNORD114-22-201ENST00000365423 72 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 SNORA51.5-201ENST00000384126 131 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 RNU6-524P-201ENST00000384270 107 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 MIR181B2-201ENST00000385004 89 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 MIR1302-5-201ENST00000408164 150 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 RNU7-104P-201ENST00000459398 79 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 RNA5SP47-201ENST00000517230 109 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 AC092634.7-201ENST00000621022 103 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 MIR6734-201ENST00000621166 68 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 MIR6767-201ENST00000637302 66 ntBASIC0.52□□□□□ -2.33
HOXA1P49639 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
HOXA1P49639 RNU6-1244P-201ENST00000363614 108 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 RNU4-36P-201ENST00000364294 144 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 RNU6-716P-201ENST00000365621 103 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 RNU6-756P-201ENST00000383997 107 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 SNORA8.2-201ENST00000384372 139 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 MIR508-201ENST00000384857 115 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 MIR92A1-201ENST00000385233 78 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 AL035461.1-201ENST00000421490 332 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 AC097635.1-201ENST00000450678 155 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 RNA5SP220-201ENST00000516298 104 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 MIR4777-201ENST00000583710 86 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 RNU7-10P-201ENST00000607194 63 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 AC025521.1-201ENST00000621624 286 ntBASIC0.51□□□□□ -2.33
HOXA1P49639 Y_RNA.95-201ENST00000363079 95 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 RNU4-45P-201ENST00000365469 141 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 RNU6-919P-201ENST00000516731 104 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 RNA5SP268-201ENST00000516828 124 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 RNU6-537P-201ENST00000517277 103 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 CYP3A137P-201ENST00000562436 69 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 MIR4639-201ENST00000584938 69 ntBASIC0.5□□□□□ -2.33
HOXA1P49639 MIR96-201ENST00000362288 78 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 SNORD36A-201ENST00000362874 73 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 SNORD45B-201ENST00000364617 72 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 MIR520E-201ENST00000384867 87 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 Y_RNA.601-201ENST00000410500 113 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 RPS29P1-201ENST00000465274 159 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 SNORA68.3-201ENST00000515906 83 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 SCARNA23-201ENST00000516060 130 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 RNA5SP227-201ENST00000516184 113 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 SCARNA16.5-201ENST00000517114 183 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms