Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 AP001340.1-201ENST00000624405 217 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 RNU6-170P-201ENST00000362832 104 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 SNORD114-5-201ENST00000362928 70 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 RNU6-652P-201ENST00000365488 107 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 MIR593-201ENST00000384856 100 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 SNORD41.1-201ENST00000391000 69 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 RNU7-195P-201ENST00000458793 62 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 MIR3144-201ENST00000579460 79 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 RNU1-29P-201ENST00000606574 126 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 MIR371B-201ENST00000638082 66 ntBASIC-0.04□□□□□ -2.42
CDX1P47902 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 RNU6-571P-201ENST00000384128 107 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 SNORD38.2-201ENST00000384470 69 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 MIR34C-201ENST00000384831 77 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 RNU6-269P-201ENST00000391077 97 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 MIR892B-201ENST00000401279 77 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 RNA5SP136-201ENST00000410906 107 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 SNORA70.25-201ENST00000612741 95 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 AC073869.9-201ENST00000641610 120 ntBASIC-0.05□□□□□ -2.42
CDX1P47902 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 MT-TI-201ENST00000387365 69 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 RNA5SP285-201ENST00000516619 119 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 RNU6-782P-201ENST00000516852 104 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 MTND5P40-201ENST00000559945 246 ntBASIC-0.06□□□□□ -2.42
CDX1P47902 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 SNORD115-19-201ENST00000363098 82 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 SNORD115-18-201ENST00000363293 82 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 SNORD115-17-201ENST00000364612 82 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 MIR145-201ENST00000384967 88 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 MIR519A1-201ENST00000385257 85 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CDX1P47902 RNU7-13P-201ENST00000516413 62 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 RNU6-850P-201ENST00000516934 103 ntBASIC-0.07□□□□□ -2.42
CDX1P47902 RNU6-509P-201ENST00000363519 107 ntBASIC-0.08□□□□□ -2.42
CDX1P47902 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.08□□□□□ -2.42
CDX1P47902 RNU6-524P-201ENST00000384270 107 ntBASIC-0.08□□□□□ -2.42
CDX1P47902 MIR329-2-201ENST00000385029 84 ntBASIC-0.08□□□□□ -2.42
CDX1P47902 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 RNU7-106P-201ENST00000459514 67 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 MIR4290-201ENST00000583807 95 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 U7.2-201ENST00000607576 63 ntBASIC-0.09□□□□□ -2.42
CDX1P47902 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 MIR501-201ENST00000390204 84 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 SNORD110-201ENST00000408189 75 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 SNORA7.5-201ENST00000410672 110 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 AC006210.1-201ENST00000424882 111 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 AL158147.1-201ENST00000443970 75 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 RNU7-74P-201ENST00000459104 62 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 AC141557.1-201ENST00000540982 400 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 MIR4743-201ENST00000584576 69 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 FTX_2.1-201ENST00000618816 94 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 MIR1255B1-201ENST00000636325 63 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 AL512310.12-203ENST00000640543 90 ntBASIC-0.1□□□□□ -2.43
CDX1P47902 RNU6-886P-201ENST00000384319 105 ntBASIC-0.11□□□□□ -2.43
CDX1P47902 MIR3920-201ENST00000581751 86 ntBASIC-0.11□□□□□ -2.43
CDX1P47902 MIR6759-201ENST00000638110 65 ntBASIC-0.11□□□□□ -2.43
CDX1P47902 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 MIR516A2-201ENST00000384888 90 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 MIR516A1-201ENST00000385033 90 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 MIR569-201ENST00000385228 96 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 NAMPTP3-201ENST00000569273 224 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 MIR548AD-201ENST00000584780 82 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 uc_338.28-201ENST00000612082 187 ntBASIC-0.12□□□□□ -2.43
CDX1P47902 RNU6V-201ENST00000384105 107 ntBASIC-0.13□□□□□ -2.43
CDX1P47902 MIR548D2-201ENST00000384955 97 ntBASIC-0.13□□□□□ -2.43
CDX1P47902 SPINT5P-201ENST00000448174 155 ntBASIC-0.13□□□□□ -2.43
CDX1P47902 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.14□□□□□ -2.43
CDX1P47902 RNA5SP484-201ENST00000458857 111 ntBASIC-0.14□□□□□ -2.43
CDX1P47902 MTND5P41-201ENST00000517498 206 ntBASIC-0.14□□□□□ -2.43
CDX1P47902 AC090425.1-201ENST00000610007 140 ntBASIC-0.14□□□□□ -2.43
CDX1P47902 RNU6-302P-201ENST00000365249 107 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNU6-735P-201ENST00000410612 107 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNU7-159P-201ENST00000459284 62 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNA5SP272-201ENST00000516095 111 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNU6-781P-201ENST00000516377 101 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 MIR4677-201ENST00000584153 80 ntBASIC-0.15□□□□□ -2.43
CDX1P47902 RNU6-235P-201ENST00000362644 107 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNU6-363P-201ENST00000362895 105 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNY4P6-201ENST00000363667 96 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 SNORA32.1-201ENST00000364514 115 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 MIR548H2-201ENST00000408874 88 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNA5SP163-201ENST00000410304 99 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 RNU6-90P-201ENST00000606352 106 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.16□□□□□ -2.44
CDX1P47902 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 179.8 ms