Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 Y_RNA.49-201ENST00000362714 112 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 RNA5SP517-201ENST00000364724 117 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 MIR548A1-201ENST00000385041 97 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 SNORA40.8-201ENST00000411034 126 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 BX276092.1-201ENST00000427368 251 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 MIR4694-201ENST00000578534 80 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 AL365222.1-201ENST00000614661 98 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 AL442128.1-201ENST00000615151 90 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 MIR6513-201ENST00000621188 64 ntBASIC0.52□□□□□ -2.33
PTPN9P43378 SNORD118-201ENST00000363593 134 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 Y_RNA.261-201ENST00000364631 102 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 SNORA8.2-201ENST00000384372 139 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 MIR598-201ENST00000384868 97 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 MIR518A1-201ENST00000385068 85 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 SNORD71-201ENST00000411292 86 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 TRAJ51-201ENST00000504127 63 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 RNU6-412P-201ENST00000516434 106 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 RNU6-406P-201ENST00000516470 107 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 AC068339.1-201ENST00000526965 141 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.51□□□□□ -2.33
PTPN9P43378 SNORA36.1-201ENST00000363424 132 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 Y_RNA.549-201ENST00000384657 102 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 MIR489-201ENST00000384923 84 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 RNU6-863P-201ENST00000515989 104 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 RNU6-850P-201ENST00000516934 103 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 MTND5P40-201ENST00000559945 246 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 AC244669.1-204ENST00000621564 178 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 AC091304.10-201ENST00000641554 121 ntBASIC0.5□□□□□ -2.33
PTPN9P43378 Y_RNA.323-201ENST00000365157 109 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 Y_RNA.342-201ENST00000365352 113 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 RNU6-1144P-201ENST00000384247 104 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 SNORD116-21-201ENST00000384507 92 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 MIR548G-201ENST00000408442 89 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 RNA5SP268-201ENST00000516828 124 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 MIR5009-201ENST00000578736 100 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 AC096720.1-201ENST00000604441 183 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 RNU6-90P-201ENST00000606352 106 ntBASIC0.49□□□□□ -2.33
PTPN9P43378 Y_RNA.35-201ENST00000362601 101 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 RNY3P2-201ENST00000362918 102 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 RNU6-1260P-201ENST00000362944 107 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 Y_RNA.173-201ENST00000363776 113 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 SNORD63B-201ENST00000411005 70 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 RNU4-61P-201ENST00000411243 107 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 AC098934.3-201ENST00000430450 190 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 RNU6-313P-201ENST00000516317 112 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 MIR7111-201ENST00000619751 72 ntBASIC0.48□□□□□ -2.33
PTPN9P43378 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.48□□□□□ -2.33
PTPN9P43378 SNORD115-24-201ENST00000363528 82 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 RNU6-1099P-201ENST00000363533 107 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 RNA5SP403-201ENST00000363598 108 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 U8.6-201ENST00000364939 135 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 RNU6-476P-201ENST00000384726 107 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 MIR599-201ENST00000385069 95 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 MIR577-201ENST00000385196 96 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 RNU6-1154P-201ENST00000391001 104 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 RNU6-1064P-201ENST00000410626 104 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.47□□□□□ -2.33
PTPN9P43378 RNU6-229P-201ENST00000516614 102 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 MIR5087-201ENST00000635826 76 ntBASIC0.47□□□□□ -2.33
PTPN9P43378 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
PTPN9P43378 RNU2-51P-201ENST00000410708 197 ntBASIC0.46□□□□□ -2.34
PTPN9P43378 Y_RNA.809-201ENST00000516058 95 ntBASIC0.46□□□□□ -2.34
PTPN9P43378 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.46□□□□□ -2.34
PTPN9P43378 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.46□□□□□ -2.34
PTPN9P43378 RNU6-832P-201ENST00000363319 107 ntBASIC0.45□□□□□ -2.34
PTPN9P43378 MIR936-201ENST00000401264 98 ntBASIC0.45□□□□□ -2.34
PTPN9P43378 SPINT5P-201ENST00000448174 155 ntBASIC0.45□□□□□ -2.34
PTPN9P43378 RNA5SP436-201ENST00000516020 115 ntBASIC0.45□□□□□ -2.34
PTPN9P43378 AC243829.3-201ENST00000622177 108 ntBASIC0.45□□□□□ -2.34
PTPN9P43378 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
PTPN9P43378 AC090625.1-201ENST00000357130 210 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 Y_RNA.247-201ENST00000364500 92 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.44□□□□□ -2.34
PTPN9P43378 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
PTPN9P43378 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.44□□□□□ -2.34
PTPN9P43378 RNA5SP227-201ENST00000516184 113 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 RNU7-161P-201ENST00000517289 62 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 MIR4439-201ENST00000583746 80 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 SNORA25.18-201ENST00000607153 114 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 MIR7107-201ENST00000611489 80 ntBASIC0.44□□□□□ -2.34
PTPN9P43378 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.43□□□□□ -2.34
PTPN9P43378 MIRLET7D-201ENST00000362263 87 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-1056P-201ENST00000383996 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-1126P-201ENST00000384002 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-1254P-201ENST00000391266 104 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU7-195P-201ENST00000458793 62 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-848P-201ENST00000515948 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-617P-201ENST00000516147 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-473P-201ENST00000516164 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 RNU6-1049P-201ENST00000516414 107 ntBASIC0.43□□□□□ -2.34
PTPN9P43378 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.43□□□□□ -2.34
PTPN9P43378 Y_RNA.10-201ENST00000362371 110 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 RNU6-726P-201ENST00000364680 107 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 Y_RNA.273-201ENST00000364703 102 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 RNU6-1107P-201ENST00000364817 104 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 RNU6-1014P-201ENST00000383940 103 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 MIR216A-201ENST00000385063 110 ntBASIC0.42□□□□□ -2.34
PTPN9P43378 RNU2-59P-201ENST00000410482 191 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms