Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.703-201ENST00000516846 111 ntBASIC0.24□□□□□ -2.37
MSH2P43246 RNU6-850P-201ENST00000516934 103 ntBASIC0.24□□□□□ -2.37
MSH2P43246 MIR6755-201ENST00000619993 66 ntBASIC0.24□□□□□ -2.37
MSH2P43246 AL157777.2-201ENST00000258070 137 ntBASIC0.23□□□□□ -2.37
MSH2P43246 Y_RNA.36-201ENST00000362602 112 ntBASIC0.23□□□□□ -2.37
MSH2P43246 RNU6-1313P-201ENST00000362622 102 ntBASIC0.23□□□□□ -2.37
MSH2P43246 MIR548L-201ENST00000408303 86 ntBASIC0.23□□□□□ -2.37
MSH2P43246 RNU7-195P-201ENST00000458793 62 ntBASIC0.23□□□□□ -2.37
MSH2P43246 RNU7-107P-201ENST00000459121 61 ntBASIC0.23□□□□□ -2.37
MSH2P43246 Y_RNA.809-201ENST00000516058 95 ntBASIC0.23□□□□□ -2.37
MSH2P43246 AC069113.3-201ENST00000521019 150 ntBASIC0.23□□□□□ -2.37
MSH2P43246 MIR3133-201ENST00000583157 78 ntBASIC0.23□□□□□ -2.37
MSH2P43246 AC067863.3-201ENST00000624172 122 ntBASIC0.23□□□□□ -2.37
MSH2P43246 AL512310.12-203ENST00000640543 90 ntBASIC0.23□□□□□ -2.37
MSH2P43246 Y_RNA.342-201ENST00000365352 113 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-1062P-201ENST00000383908 107 ntBASIC0.22□□□□□ -2.37
MSH2P43246 Y_RNA.423-201ENST00000384057 113 ntBASIC0.22□□□□□ -2.37
MSH2P43246 Y_RNA.507-201ENST00000384500 99 ntBASIC0.22□□□□□ -2.37
MSH2P43246 AL353813.1-201ENST00000440700 253 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-848P-201ENST00000515948 107 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-617P-201ENST00000516147 107 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-473P-201ENST00000516164 107 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-1049P-201ENST00000516414 107 ntBASIC0.22□□□□□ -2.37
MSH2P43246 RNU6-1006P-201ENST00000516998 103 ntBASIC0.22□□□□□ -2.37
MSH2P43246 SNORD50.2-201ENST00000365465 70 ntBASIC0.21□□□□□ -2.38
MSH2P43246 RNU6-409P-201ENST00000384114 104 ntBASIC0.21□□□□□ -2.38
MSH2P43246 MIR193B-201ENST00000384907 83 ntBASIC0.21□□□□□ -2.38
MSH2P43246 RNU7-106P-201ENST00000459514 67 ntBASIC0.21□□□□□ -2.38
MSH2P43246 RNU6-1018P-201ENST00000516577 106 ntBASIC0.21□□□□□ -2.38
MSH2P43246 MTND5P40-201ENST00000559945 246 ntBASIC0.21□□□□□ -2.38
MSH2P43246 AL162376.1-201ENST00000624117 175 ntBASIC0.21□□□□□ -2.38
MSH2P43246 Y_RNA.35-201ENST00000362601 101 ntBASIC0.2□□□□□ -2.38
MSH2P43246 RNU6-1260P-201ENST00000362944 107 ntBASIC0.2□□□□□ -2.38
MSH2P43246 Y_RNA.155-201ENST00000363632 101 ntBASIC0.2□□□□□ -2.38
MSH2P43246 Y_RNA.362-201ENST00000365518 110 ntBASIC0.2□□□□□ -2.38
MSH2P43246 RNU6-746P-201ENST00000384112 109 ntBASIC0.2□□□□□ -2.38
MSH2P43246 RNU6-80P-201ENST00000384195 107 ntBASIC0.2□□□□□ -2.38
MSH2P43246 SNORD41.1-201ENST00000391000 69 ntBASIC0.2□□□□□ -2.38
MSH2P43246 MIR4752-201ENST00000579672 72 ntBASIC0.2□□□□□ -2.38
MSH2P43246 MIR4315-1-201ENST00000636800 73 ntBASIC0.2□□□□□ -2.38
MSH2P43246 MIR4315-2-201ENST00000640925 73 ntBASIC0.2□□□□□ -2.38
MSH2P43246 Y_RNA.85-201ENST00000363014 111 ntBASIC0.19□□□□□ -2.38
MSH2P43246 RNU6-774P-201ENST00000363238 107 ntBASIC0.19□□□□□ -2.38
MSH2P43246 Y_RNA.525-201ENST00000384570 113 ntBASIC0.19□□□□□ -2.38
MSH2P43246 RNU6-816P-201ENST00000390914 107 ntBASIC0.19□□□□□ -2.38
MSH2P43246 RNU6-1268P-201ENST00000391214 107 ntBASIC0.19□□□□□ -2.38
MSH2P43246 RNU6-1239P-201ENST00000391310 107 ntBASIC0.19□□□□□ -2.38
MSH2P43246 RNU1-29P-201ENST00000606574 126 ntBASIC0.19□□□□□ -2.38
MSH2P43246 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
MSH2P43246 AL162726.3-218ENST00000636401 95 ntBASIC0.19□□□□□ -2.38
MSH2P43246 MIR3914-2-201ENST00000637339 95 ntBASIC0.19□□□□□ -2.38
MSH2P43246 MIR924-201ENST00000638017 53 ntBASIC0.19□□□□□ -2.38
MSH2P43246 SNORA9.1-201ENST00000362412 131 ntBASIC0.18□□□□□ -2.38
MSH2P43246 SNORD38.1-201ENST00000363863 68 ntBASIC0.18□□□□□ -2.38
MSH2P43246 Y_RNA.218-201ENST00000364218 104 ntBASIC0.18□□□□□ -2.38
MSH2P43246 MIR1912-201ENST00000410389 80 ntBASIC0.18□□□□□ -2.38
MSH2P43246 RPL39P34-201ENST00000477141 156 ntBASIC0.18□□□□□ -2.38
MSH2P43246 SNORA62.5-201ENST00000516634 120 ntBASIC0.18□□□□□ -2.38
MSH2P43246 Y_RNA.712-201ENST00000517011 92 ntBASIC0.18□□□□□ -2.38
MSH2P43246 RNU6-704P-201ENST00000364162 103 ntBASIC0.17□□□□□ -2.38
MSH2P43246 Y_RNA.247-201ENST00000364500 92 ntBASIC0.17□□□□□ -2.38
MSH2P43246 SNORA2A-201ENST00000383885 135 ntBASIC0.17□□□□□ -2.38
MSH2P43246 RNU6-524P-201ENST00000384270 107 ntBASIC0.17□□□□□ -2.38
MSH2P43246 MIR516A2-201ENST00000384888 90 ntBASIC0.17□□□□□ -2.38
MSH2P43246 MIR516A1-201ENST00000385033 90 ntBASIC0.17□□□□□ -2.38
MSH2P43246 SPINT5P-201ENST00000448174 155 ntBASIC0.17□□□□□ -2.38
MSH2P43246 MIR4679-2-201ENST00000578358 77 ntBASIC0.17□□□□□ -2.38
MSH2P43246 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.17□□□□□ -2.38
MSH2P43246 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.17□□□□□ -2.38
MSH2P43246 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.17□□□□□ -2.38
MSH2P43246 RNU6-1201P-201ENST00000384227 107 ntBASIC0.16□□□□□ -2.38
MSH2P43246 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
MSH2P43246 MIR760-201ENST00000390220 80 ntBASIC0.16□□□□□ -2.38
MSH2P43246 MIR548G-201ENST00000408442 89 ntBASIC0.16□□□□□ -2.38
MSH2P43246 RNU6-659P-201ENST00000516454 104 ntBASIC0.16□□□□□ -2.38
MSH2P43246 MIR1273G-201ENST00000577677 100 ntBASIC0.16□□□□□ -2.38
MSH2P43246 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
MSH2P43246 RNU6-90P-201ENST00000606352 106 ntBASIC0.16□□□□□ -2.38
MSH2P43246 Y_RNA.71-201ENST00000362892 104 ntBASIC0.15□□□□□ -2.39
MSH2P43246 SNORD114-26-201ENST00000363543 72 ntBASIC0.15□□□□□ -2.39
MSH2P43246 Y_RNA.323-201ENST00000365157 109 ntBASIC0.15□□□□□ -2.39
MSH2P43246 RNU6-269P-201ENST00000391077 97 ntBASIC0.15□□□□□ -2.39
MSH2P43246 Y_RNA.649-201ENST00000459077 103 ntBASIC0.15□□□□□ -2.39
MSH2P43246 AC007012.1-201ENST00000567192 175 ntBASIC0.15□□□□□ -2.39
MSH2P43246 AL442128.1-201ENST00000615151 90 ntBASIC0.15□□□□□ -2.39
MSH2P43246 AL035470.1-201ENST00000622571 220 ntBASIC0.15□□□□□ -2.39
MSH2P43246 Y_RNA.173-201ENST00000363776 113 ntBASIC0.14□□□□□ -2.39
MSH2P43246 RNA5SP128-201ENST00000365305 116 ntBASIC0.14□□□□□ -2.39
MSH2P43246 RNA5SP299-201ENST00000391203 116 ntBASIC0.14□□□□□ -2.39
MSH2P43246 RNU6-1265P-201ENST00000516342 103 ntBASIC0.14□□□□□ -2.39
MSH2P43246 RNA5SP480-201ENST00000516840 109 ntBASIC0.14□□□□□ -2.39
MSH2P43246 MIR3920-201ENST00000581751 86 ntBASIC0.14□□□□□ -2.39
MSH2P43246 Y_RNA.309-201ENST00000365046 111 ntBASIC0.13□□□□□ -2.39
MSH2P43246 RNU6-1254P-201ENST00000391266 104 ntBASIC0.13□□□□□ -2.39
MSH2P43246 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.13□□□□□ -2.39
MSH2P43246 RNU7-129P-201ENST00000516128 62 ntBASIC0.13□□□□□ -2.39
MSH2P43246 RNU6-1232P-201ENST00000516299 86 ntBASIC0.13□□□□□ -2.39
MSH2P43246 RNU7-13P-201ENST00000516413 62 ntBASIC0.13□□□□□ -2.39
MSH2P43246 MIR5706-201ENST00000579841 80 ntBASIC0.13□□□□□ -2.39
MSH2P43246 AC023932.2-201ENST00000603176 175 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms