Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RNU6-109P-201ENST00000516364 107 ntBASIC1.28□□□□□ -2.2
ERCC3P19447 RNU6-184P-201ENST00000516514 107 ntBASIC1.28□□□□□ -2.2
ERCC3P19447 AL353765.1-201ENST00000605514 183 ntBASIC1.28□□□□□ -2.2
ERCC3P19447 RNU6-86P-201ENST00000606534 107 ntBASIC1.28□□□□□ -2.2
ERCC3P19447 RNU6-755P-201ENST00000364400 103 ntBASIC1.27□□□□□ -2.21
ERCC3P19447 Y_RNA.57-201ENST00000362806 113 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 Y_RNA.78-201ENST00000362970 110 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 MIR1285-1-201ENST00000408593 84 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 SNORA31.14-201ENST00000516728 116 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 MIR6788-201ENST00000618842 66 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 AC091304.10-201ENST00000641554 121 ntBASIC1.26□□□□□ -2.21
ERCC3P19447 Y_RNA.174-201ENST00000363781 105 ntBASIC1.25□□□□□ -2.21
ERCC3P19447 SNORA36.2-201ENST00000384004 127 ntBASIC1.25□□□□□ -2.21
ERCC3P19447 AC244098.3-201ENST00000424803 96 ntBASIC1.25□□□□□ -2.21
ERCC3P19447 SNRPGP12-201ENST00000449481 213 ntBASIC1.25□□□□□ -2.21
ERCC3P19447 Y_RNA.32-201ENST00000362589 110 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 RNU6-170P-201ENST00000362832 104 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 Y_RNA.342-201ENST00000365352 113 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 Y_RNA.540-201ENST00000384638 111 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 MIR608-201ENST00000384820 100 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 MIR644A-201ENST00000385262 94 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 MIR548J-201ENST00000408833 112 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 AC092628.1-201ENST00000436250 252 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 AC138907.6-201ENST00000568401 126 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 AC138869.1-201ENST00000568623 124 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 MIR151B-201ENST00000584249 96 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 AC012531.4-201ENST00000616509 177 ntBASIC1.24□□□□□ -2.21
ERCC3P19447 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.23□□□□□ -2.21
ERCC3P19447 Y_RNA.95-201ENST00000363079 95 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 RNA5SP245-201ENST00000364239 121 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 RNU6-1163P-201ENST00000364516 107 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 RNU6-147P-201ENST00000383983 107 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 SNORD63B-201ENST00000411005 70 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 TRAJ51-201ENST00000504127 63 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 RNU6-1223P-201ENST00000517124 104 ntBASIC1.23□□□□□ -2.21
ERCC3P19447 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
ERCC3P19447 Y_RNA.467-201ENST00000384297 102 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 Y_RNA.544-201ENST00000384650 113 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 MIR516A2-201ENST00000384888 90 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 MIR516A1-201ENST00000385033 90 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 MIR548Z-201ENST00000584743 97 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 MIR6515-201ENST00000619843 57 ntBASIC1.22□□□□□ -2.21
ERCC3P19447 Y_RNA.107-201ENST00000363190 121 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 RNU6-1125P-201ENST00000363601 107 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 RNU6-480P-201ENST00000384332 107 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.21□□□□□ -2.22
ERCC3P19447 AC211469.2-201ENST00000605461 205 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 SNORD114-21-201ENST00000606412 72 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 uc_338.16-201ENST00000621804 95 ntBASIC1.21□□□□□ -2.22
ERCC3P19447 Y_RNA.173-201ENST00000363776 113 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 RNU6-32P-201ENST00000383948 107 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 RNU6-13P-201ENST00000384248 107 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 RNU6-12P-201ENST00000384604 107 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 RNU6-41P-201ENST00000384741 107 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 RNU7-195P-201ENST00000458793 62 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 PSMC1P5-201ENST00000512850 177 ntBASIC1.2□□□□□ -2.22
ERCC3P19447 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
ERCC3P19447 MIR373-201ENST00000362273 69 ntBASIC1.19□□□□□ -2.22
ERCC3P19447 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.19□□□□□ -2.22
ERCC3P19447 AC103810.9-201ENST00000606688 112 ntBASIC1.19□□□□□ -2.22
ERCC3P19447 Y_RNA.818-201ENST00000618813 71 ntBASIC1.19□□□□□ -2.22
ERCC3P19447 MIR18A-201ENST00000362310 71 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 MIR181B2-201ENST00000385004 89 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 Y_RNA.809-201ENST00000516058 95 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 RNU6-537P-201ENST00000517277 103 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 MIR3678-201ENST00000578455 94 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 MIR4439-201ENST00000583746 80 ntBASIC1.18□□□□□ -2.22
ERCC3P19447 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
ERCC3P19447 RNU6-1229P-201ENST00000364295 107 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 RNU6-153P-201ENST00000364422 104 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 Y_RNA.495-201ENST00000384435 112 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 MIR7-2-201ENST00000384970 110 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 MIR599-201ENST00000385069 95 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 RNU6-243P-201ENST00000391140 107 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 RNU7-106P-201ENST00000459514 67 ntBASIC1.17□□□□□ -2.22
ERCC3P19447 RNU6-813P-201ENST00000384691 107 ntBASIC1.16□□□□□ -2.22
ERCC3P19447 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.16□□□□□ -2.22
ERCC3P19447 MIR4777-201ENST00000583710 86 ntBASIC1.16□□□□□ -2.22
ERCC3P19447 AC103810.7-201ENST00000607821 91 ntBASIC1.16□□□□□ -2.22
ERCC3P19447 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.16□□□□□ -2.22
ERCC3P19447 PVT1_3.1-201ENST00000620853 95 ntBASIC1.16□□□□□ -2.22
ERCC3P19447 Y_RNA.221-201ENST00000364248 96 ntBASIC1.15□□□□□ -2.23
ERCC3P19447 RNU4-38P-201ENST00000364472 129 ntBASIC1.15□□□□□ -2.23
ERCC3P19447 RNU6-1254P-201ENST00000391266 104 ntBASIC1.15□□□□□ -2.23
ERCC3P19447 RNU7-61P-201ENST00000515897 61 ntBASIC1.15□□□□□ -2.23
ERCC3P19447 RNA5SP480-201ENST00000516840 109 ntBASIC1.15□□□□□ -2.23
ERCC3P19447 Y_RNA.93-201ENST00000363066 109 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 SNORD115-24-201ENST00000363528 82 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 RNU6-1244P-201ENST00000363614 108 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 RNU6-644P-201ENST00000391155 98 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 Y_RNA.705-201ENST00000516862 110 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 MIR3973-201ENST00000579824 107 ntBASIC1.14□□□□□ -2.23
ERCC3P19447 Y_RNA.96-201ENST00000363092 109 ntBASIC1.13□□□□□ -2.23
ERCC3P19447 SNORA40.13-201ENST00000516379 120 ntBASIC1.13□□□□□ -2.23
ERCC3P19447 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
ERCC3P19447 SNORD114-26-201ENST00000363543 72 ntBASIC1.12□□□□□ -2.23
ERCC3P19447 RNU6-1187P-201ENST00000364771 110 ntBASIC1.12□□□□□ -2.23
ERCC3P19447 RNU4-45P-201ENST00000365469 141 ntBASIC1.12□□□□□ -2.23
ERCC3P19447 AC097635.1-201ENST00000450678 155 ntBASIC1.12□□□□□ -2.23
ERCC3P19447 RNA5SP436-201ENST00000516020 115 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms