Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR516A1-201ENST00000385033 90 ntBASIC0.95□□□□□ -2.26
LDB3O75112 MIR125B2-201ENST00000385128 89 ntBASIC0.95□□□□□ -2.26
LDB3O75112 MIR6082-201ENST00000613604 109 ntBASIC0.95□□□□□ -2.26
LDB3O75112 Y_RNA.191-201ENST00000363972 113 ntBASIC0.94□□□□□ -2.26
LDB3O75112 SNORD115-27-201ENST00000364430 82 ntBASIC0.94□□□□□ -2.26
LDB3O75112 RNU4-38P-201ENST00000364472 129 ntBASIC0.94□□□□□ -2.26
LDB3O75112 RNU6-573P-201ENST00000383938 106 ntBASIC0.94□□□□□ -2.26
LDB3O75112 RNY1P4-201ENST00000384595 115 ntBASIC0.94□□□□□ -2.26
LDB3O75112 Y_RNA.609-201ENST00000410669 89 ntBASIC0.94□□□□□ -2.26
LDB3O75112 TRAJ51-201ENST00000504127 63 ntBASIC0.94□□□□□ -2.26
LDB3O75112 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.94□□□□□ -2.26
LDB3O75112 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
LDB3O75112 Y_RNA.57-201ENST00000362806 113 ntBASIC0.93□□□□□ -2.26
LDB3O75112 SNORD116-10-201ENST00000363791 102 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNA5SP245-201ENST00000364239 121 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNA5SP173-201ENST00000364857 136 ntBASIC0.93□□□□□ -2.26
LDB3O75112 SNORD114-24-201ENST00000365029 72 ntBASIC0.93□□□□□ -2.26
LDB3O75112 SNORD38.2-201ENST00000384470 69 ntBASIC0.93□□□□□ -2.26
LDB3O75112 SNORA26.2-201ENST00000390922 122 ntBASIC0.93□□□□□ -2.26
LDB3O75112 SNORD100-201ENST00000408573 76 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNU6-994P-201ENST00000410507 111 ntBASIC0.93□□□□□ -2.26
LDB3O75112 FABP5P4-201ENST00000437203 171 ntBASIC0.93□□□□□ -2.26
LDB3O75112 AL161932.1-201ENST00000437408 146 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNU7-85P-201ENST00000458851 63 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNU7-102P-201ENST00000458948 62 ntBASIC0.93□□□□□ -2.26
LDB3O75112 snoU13.11-201ENST00000459219 104 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNU7-156P-201ENST00000517214 74 ntBASIC0.93□□□□□ -2.26
LDB3O75112 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.93□□□□□ -2.26
LDB3O75112 MIR4804-201ENST00000581683 73 ntBASIC0.93□□□□□ -2.26
LDB3O75112 RNU4-58P-201ENST00000363192 141 ntBASIC0.92□□□□□ -2.26
LDB3O75112 SNORA25.9-201ENST00000365087 128 ntBASIC0.92□□□□□ -2.26
LDB3O75112 RNU6-1335P-201ENST00000365426 107 ntBASIC0.92□□□□□ -2.26
LDB3O75112 Y_RNA.620-201ENST00000411009 88 ntBASIC0.92□□□□□ -2.26
LDB3O75112 AC067940.1-201ENST00000458411 300 ntBASIC0.92□□□□□ -2.26
LDB3O75112 RNU7-56P-201ENST00000458744 62 ntBASIC0.92□□□□□ -2.26
LDB3O75112 RN7SKP12-201ENST00000516275 143 ntBASIC0.92□□□□□ -2.26
LDB3O75112 MIR4668-201ENST00000582284 70 ntBASIC0.92□□□□□ -2.26
LDB3O75112 SNORD92-201ENST00000585078 85 ntBASIC0.92□□□□□ -2.26
LDB3O75112 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
LDB3O75112 MIR8070-201ENST00000616510 88 ntBASIC0.92□□□□□ -2.26
LDB3O75112 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
LDB3O75112 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
LDB3O75112 SNORD36A-201ENST00000362874 73 ntBASIC0.91□□□□□ -2.26
LDB3O75112 RNU6-497P-201ENST00000365316 104 ntBASIC0.91□□□□□ -2.26
LDB3O75112 RNU6-571P-201ENST00000384128 107 ntBASIC0.91□□□□□ -2.26
LDB3O75112 RNU6-675P-201ENST00000384236 104 ntBASIC0.91□□□□□ -2.26
LDB3O75112 SNORD63B-201ENST00000411005 70 ntBASIC0.91□□□□□ -2.26
LDB3O75112 AL606490.4-201ENST00000423117 127 ntBASIC0.91□□□□□ -2.26
LDB3O75112 SNORD124-201ENST00000459577 104 ntBASIC0.91□□□□□ -2.26
LDB3O75112 RNA5SP102-201ENST00000516865 106 ntBASIC0.91□□□□□ -2.26
LDB3O75112 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
LDB3O75112 MIR96-201ENST00000362288 78 ntBASIC0.9□□□□□ -2.27
LDB3O75112 RNU6-291P-201ENST00000384720 107 ntBASIC0.9□□□□□ -2.27
LDB3O75112 MIR450A2-201ENST00000385022 100 ntBASIC0.9□□□□□ -2.27
LDB3O75112 MIR942-201ENST00000401111 86 ntBASIC0.9□□□□□ -2.27
LDB3O75112 MIR1302-4-201ENST00000408701 150 ntBASIC0.9□□□□□ -2.27
LDB3O75112 RNU7-195P-201ENST00000458793 62 ntBASIC0.9□□□□□ -2.27
LDB3O75112 AC022137.1-201ENST00000483735 151 ntBASIC0.9□□□□□ -2.27
LDB3O75112 RNU6-448P-201ENST00000517052 107 ntBASIC0.9□□□□□ -2.27
LDB3O75112 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
LDB3O75112 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.9□□□□□ -2.27
LDB3O75112 MIR1-1-201ENST00000362147 71 ntBASIC0.89□□□□□ -2.27
LDB3O75112 Y_RNA.96-201ENST00000363092 109 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RNU6-1125P-201ENST00000363601 107 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RNU6-480P-201ENST00000384332 107 ntBASIC0.89□□□□□ -2.27
LDB3O75112 SNORD116-22-201ENST00000384430 92 ntBASIC0.89□□□□□ -2.27
LDB3O75112 Y_RNA.536-201ENST00000384621 113 ntBASIC0.89□□□□□ -2.27
LDB3O75112 MIR100-201ENST00000385259 80 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.89□□□□□ -2.27
LDB3O75112 AC092628.1-201ENST00000436250 252 ntBASIC0.89□□□□□ -2.27
LDB3O75112 SNORA72.7-201ENST00000516349 94 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RNU6-977P-201ENST00000516411 103 ntBASIC0.89□□□□□ -2.27
LDB3O75112 AL136317.1-201ENST00000612653 226 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RMST_2.1-201ENST00000617263 136 ntBASIC0.89□□□□□ -2.27
LDB3O75112 RNU6-364P-201ENST00000384387 107 ntBASIC0.88□□□□□ -2.27
LDB3O75112 RNU6-1152P-201ENST00000384576 107 ntBASIC0.88□□□□□ -2.27
LDB3O75112 MIR520F-201ENST00000384824 87 ntBASIC0.88□□□□□ -2.27
LDB3O75112 MIR938-201ENST00000401216 83 ntBASIC0.88□□□□□ -2.27
LDB3O75112 MIR1827-201ENST00000408549 66 ntBASIC0.88□□□□□ -2.27
LDB3O75112 SNORD4B-201ENST00000459083 72 ntBASIC0.88□□□□□ -2.27
LDB3O75112 U7.7-201ENST00000459276 60 ntBASIC0.88□□□□□ -2.27
LDB3O75112 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.88□□□□□ -2.27
LDB3O75112 RNU6-75P-201ENST00000515944 104 ntBASIC0.88□□□□□ -2.27
LDB3O75112 RNU6-1194P-201ENST00000516208 104 ntBASIC0.88□□□□□ -2.27
LDB3O75112 Y_RNA.697-201ENST00000516776 113 ntBASIC0.88□□□□□ -2.27
LDB3O75112 RNU6-765P-201ENST00000516916 99 ntBASIC0.88□□□□□ -2.27
LDB3O75112 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.88□□□□□ -2.27
LDB3O75112 MIR101-2-201ENST00000362195 79 ntBASIC0.87□□□□□ -2.27
LDB3O75112 Y_RNA.32-201ENST00000362589 110 ntBASIC0.87□□□□□ -2.27
LDB3O75112 RNU6-957P-201ENST00000363652 99 ntBASIC0.87□□□□□ -2.27
LDB3O75112 RNY1P1-201ENST00000364372 112 ntBASIC0.87□□□□□ -2.27
LDB3O75112 MIR499A-201ENST00000384903 122 ntBASIC0.87□□□□□ -2.27
LDB3O75112 SNORD89-201ENST00000390981 114 ntBASIC0.87□□□□□ -2.27
LDB3O75112 RNU7-153P-201ENST00000516455 62 ntBASIC0.87□□□□□ -2.27
LDB3O75112 RNU6-1110P-201ENST00000516462 101 ntBASIC0.87□□□□□ -2.27
LDB3O75112 MIR6504-201ENST00000613520 61 ntBASIC0.87□□□□□ -2.27
LDB3O75112 MIR1245B-201ENST00000636115 69 ntBASIC0.87□□□□□ -2.27
LDB3O75112 MIR6767-201ENST00000637302 66 ntBASIC0.87□□□□□ -2.27
LDB3O75112 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
LDB3O75112 Y_RNA.56-201ENST00000362798 112 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 216.8 ms