Protein–RNA interactions for Protein: A0A0J9YWV2

TRBV4-1, T-cell receptor beta variable 4-1 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV4-1A0A0J9YWV2 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 RNA5SP247-201ENST00000411181 105 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 Y_RNA.712-201ENST00000517011 92 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 MIR4752-201ENST00000579672 72 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 MIR3133-201ENST00000583157 78 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 AL162726.3-218ENST00000636401 95 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 AL512310.12-203ENST00000640543 90 ntBASIC0.16□□□□□ -2.38
TRBV4-1A0A0J9YWV2 SNORA9.1-201ENST00000362412 131 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SNORD38.1-201ENST00000363863 68 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR613-201ENST00000385248 95 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR548L-201ENST00000408303 86 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR4679-2-201ENST00000578358 77 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR3914-2-201ENST00000637339 95 ntBASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.155-201ENST00000363632 101 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SNORA25.9-201ENST00000365087 128 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.525-201ENST00000384570 113 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-816P-201ENST00000390914 107 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1268P-201ENST00000391214 107 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1239P-201ENST00000391310 107 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR936-201ENST00000401264 98 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RPL39P34-201ENST00000477141 156 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1265P-201ENST00000516342 103 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MTND5P40-201ENST00000559945 246 ntBASIC0.14□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SNORA42.1-201ENST00000363515 137 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-704P-201ENST00000364162 103 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.218-201ENST00000364218 104 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.247-201ENST00000364500 92 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.323-201ENST00000365157 109 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SNORA2A-201ENST00000383885 135 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1201P-201ENST00000384227 107 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-524P-201ENST00000384270 107 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR516A2-201ENST00000384888 90 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR516A1-201ENST00000385033 90 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR760-201ENST00000390220 80 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR1912-201ENST00000410389 80 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-659P-201ENST00000516454 104 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR3920-201ENST00000581751 86 ntBASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.13□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.173-201ENST00000363776 113 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNA5SP128-201ENST00000365305 116 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-269P-201ENST00000391077 97 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR548G-201ENST00000408442 89 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1223P-201ENST00000517124 104 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR5706-201ENST00000579841 80 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-90P-201ENST00000606352 106 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 AC073869.9-201ENST00000641610 120 ntBASIC0.12□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.71-201ENST00000362892 104 ntBASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-774P-201ENST00000363238 107 ntBASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SPINT5P-201ENST00000448174 155 ntBASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 AL442128.1-201ENST00000615151 90 ntBASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 AL035470.1-201ENST00000622571 220 ntBASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.11□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.164-201ENST00000363709 102 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.309-201ENST00000365046 111 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 Y_RNA.377-201ENST00000365644 108 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1254P-201ENST00000391266 104 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-1232P-201ENST00000516299 86 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU7-13P-201ENST00000516413 62 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 AC007012.1-201ENST00000567192 175 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 uc_338.28-201ENST00000612082 187 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 SNORA70.25-201ENST00000612741 95 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 U6.95-201ENST00000636931 70 ntBASIC0.1□□□□□ -2.39
TRBV4-1A0A0J9YWV2 RNU6-127P-201ENST00000390897 107 ntBASIC0.09□□□□□ -2.4
TRBV4-1A0A0J9YWV2 Y_RNA.649-201ENST00000459077 103 ntBASIC0.09□□□□□ -2.4
TRBV4-1A0A0J9YWV2 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.09□□□□□ -2.4
TRBV4-1A0A0J9YWV2 Y_RNA.57-201ENST00000362806 113 ntBASIC0.08□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD36A-201ENST00000362874 73 ntBASIC0.08□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNA5SP299-201ENST00000391203 116 ntBASIC0.08□□□□□ -2.4
TRBV4-1A0A0J9YWV2 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.08□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD33.1-201ENST00000516213 88 ntBASIC0.08□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNA5SP214-201ENST00000363378 118 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNU6-509P-201ENST00000363519 107 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD114-9-201ENST00000364370 72 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD116-14-201ENST00000383894 92 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD116-17-201ENST00000383929 92 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD116-15-201ENST00000384445 92 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 Y_RNA.549-201ENST00000384657 102 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD116-19-201ENST00000384729 92 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR577-201ENST00000385196 96 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR501-201ENST00000390204 84 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNU7-74P-201ENST00000459104 62 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNU7-129P-201ENST00000516128 62 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR4694-201ENST00000578534 80 ntBASIC0.07□□□□□ -2.4
TRBV4-1A0A0J9YWV2 SNORD115-44-201ENST00000365391 82 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNU6-243P-201ENST00000391140 107 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNA5SP436-201ENST00000516020 115 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 RNU6-782P-201ENST00000516852 104 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR548AD-201ENST00000584780 82 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 U7.6-201ENST00000610841 64 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR499B-201ENST00000636498 73 ntBASIC0.06□□□□□ -2.4
TRBV4-1A0A0J9YWV2 Y_RNA.353-201ENST00000365440 108 ntBASIC0.05□□□□□ -2.4
TRBV4-1A0A0J9YWV2 AC068339.1-201ENST00000526965 141 ntBASIC0.05□□□□□ -2.4
TRBV4-1A0A0J9YWV2 MIR548AG2-201ENST00000581228 64 ntBASIC0.05□□□□□ -2.4
TRBV4-1A0A0J9YWV2 AC104408.1-201ENST00000605241 170 ntBASIC0.05□□□□□ -2.4
TRBV4-1A0A0J9YWV2 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 211.6 ms