Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 SNORA75.2-201ENST00000391138 150 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 SNORA75.3-201ENST00000391231 150 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 RNU6-1254P-201ENST00000391266 104 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 RNU7-85P-201ENST00000458851 63 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 AC036111.3-201ENST00000526389 112 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.09□□□□□ -2.07
NOD1Q9Y239 MIR4498-201ENST00000577599 66 ntBASIC2.09□□□□□ -2.07
NOD1Q9Y239 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.09□□□□□ -2.07
NOD1Q9Y239 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
NOD1Q9Y239 SNORD36A-201ENST00000362874 73 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 RNA5SP160-201ENST00000364866 120 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 RNU6-934P-201ENST00000365154 107 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 RNU6-243P-201ENST00000391140 107 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 MIR1236-201ENST00000408340 102 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 RNU1-40P-201ENST00000516816 164 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 RNU1-97P-201ENST00000516872 164 ntBASIC2.08□□□□□ -2.08
NOD1Q9Y239 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
NOD1Q9Y239 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
NOD1Q9Y239 MIR378A-201ENST00000362177 66 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 Y_RNA.316-201ENST00000365118 111 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
NOD1Q9Y239 snoU13.11-201ENST00000459219 104 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 SNORD13-201ENST00000459299 104 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 RNU6-857P-201ENST00000515893 110 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 AC013244.2-201ENST00000603396 103 ntBASIC2.07□□□□□ -2.08
NOD1Q9Y239 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
NOD1Q9Y239 MIR101-2-201ENST00000362195 79 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 Y_RNA.244-201ENST00000364484 109 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 MIR934-201ENST00000401241 83 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 SNORD100-201ENST00000408573 76 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 AC015818.7-201ENST00000428754 109 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 RNU7-106P-201ENST00000459514 67 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 AC025033.1-201ENST00000463883 194 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 RNU7-153P-201ENST00000516455 62 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 MIR8081-201ENST00000611533 95 ntBASIC2.06□□□□□ -2.08
NOD1Q9Y239 SNORD63B-201ENST00000411005 70 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 RNU6-1194P-201ENST00000516208 104 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 RNU6-902P-201ENST00000517212 91 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 MIR4771-2-201ENST00000577758 74 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 MIR4771-1-201ENST00000582617 74 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 MIR6082-201ENST00000613604 109 ntBASIC2.05□□□□□ -2.08
NOD1Q9Y239 Y_RNA.13-201ENST00000362403 112 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 Y_RNA.363-201ENST00000365529 113 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 SNORA17.3-201ENST00000391159 129 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
NOD1Q9Y239 AC140658.3-201ENST00000567603 271 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 AC023827.1-201ENST00000569247 97 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 MIR4536-1-201ENST00000583537 88 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 snoU13.31-201ENST00000607291 104 ntBASIC2.04□□□□□ -2.08
NOD1Q9Y239 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
NOD1Q9Y239 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
NOD1Q9Y239 MIR635-201ENST00000384830 98 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 MIR9-3-201ENST00000385084 90 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 SNORD111-201ENST00000408139 94 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 AL591704.2-201ENST00000421658 181 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 RNU6-65P-201ENST00000516332 98 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.03□□□□□ -2.08
NOD1Q9Y239 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.09
NOD1Q9Y239 RNU6-24P-201ENST00000384440 107 ntBASIC2.02□□□□□ -2.09
NOD1Q9Y239 Y_RNA.536-201ENST00000384621 113 ntBASIC2.02□□□□□ -2.09
NOD1Q9Y239 MIR125B2-201ENST00000385128 89 ntBASIC2.02□□□□□ -2.09
NOD1Q9Y239 MIR548H5-201ENST00000580314 60 ntBASIC2.02□□□□□ -2.09
NOD1Q9Y239 AC106800.4-201ENST00000614905 153 ntBASIC2.02□□□□□ -2.09
NOD1Q9Y239 Y_RNA.508-201ENST00000384502 114 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 RNU6-466P-201ENST00000391224 103 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 AC079804.2-201ENST00000490376 200 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 TRAJ51-201ENST00000504127 63 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 MIR4781-201ENST00000585250 76 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 MIR502-201ENST00000606349 86 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 RNU7-10P-201ENST00000607194 63 ntBASIC2.01□□□□□ -2.09
NOD1Q9Y239 Y_RNA.283-201ENST00000364798 112 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 RNA5SP37-201ENST00000365420 130 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 RNU4-52P-201ENST00000384209 138 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 RNU6-910P-201ENST00000390844 107 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2□□□□□ -2.09
NOD1Q9Y239 RNU7-21P-201ENST00000459430 62 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 SNORA25.13-201ENST00000516395 103 ntBASIC2□□□□□ -2.09
NOD1Q9Y239 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2□□□□□ -2.09
NOD1Q9Y239 MIR337-201ENST00000362281 93 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 Y_RNA.56-201ENST00000362798 112 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 SNORA80D-201ENST00000384488 135 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 RPS26P5-201ENST00000418544 335 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 AC090255.1-201ENST00000495779 349 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 RNU7-40P-201ENST00000516397 64 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 RNU6-765P-201ENST00000516916 99 ntBASIC1.99□□□□□ -2.09
NOD1Q9Y239 RNU6-811P-201ENST00000384069 107 ntBASIC1.98□□□□□ -2.09
NOD1Q9Y239 RNU7-195P-201ENST00000458793 62 ntBASIC1.98□□□□□ -2.09
NOD1Q9Y239 RNU7-156P-201ENST00000517214 74 ntBASIC1.98□□□□□ -2.09
NOD1Q9Y239 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.98□□□□□ -2.09
NOD1Q9Y239 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
NOD1Q9Y239 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
NOD1Q9Y239 Y_RNA.42-201ENST00000362660 108 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 Y_RNA.94-201ENST00000363068 106 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 RNU6-957P-201ENST00000363652 99 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
NOD1Q9Y239 RNU6-717P-201ENST00000459076 104 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 RNU6-75P-201ENST00000515944 104 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 Y_RNA.697-201ENST00000516776 113 ntBASIC1.97□□□□□ -2.09
NOD1Q9Y239 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 278.6 ms