Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC133485.1-201ENST00000567176 124 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 MTND5P34-201ENST00000568888 325 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 AC008608.1-201ENST00000603910 127 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.30-201ENST00000362572 97 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 RNU6-1313P-201ENST00000362622 102 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 RNA5SP133-201ENST00000363368 119 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 RNU4-38P-201ENST00000364472 129 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.323-201ENST00000365157 109 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 MIR520F-201ENST00000384824 87 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 AC068339.1-201ENST00000526965 141 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 AC090897.1-201ENST00000580909 226 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 MIR376B-201ENST00000614515 100 ntBASIC0.93□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.13-201ENST00000362403 112 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
VPS4AQ9UN37 RNU6-816P-201ENST00000390914 107 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 RNU6-1268P-201ENST00000391214 107 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 RNU6-1239P-201ENST00000391310 107 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.92□□□□□ -2.26
VPS4AQ9UN37 SNORA25.16-201ENST00000516741 121 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 RNU6-1006P-201ENST00000516998 103 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 MIR5009-201ENST00000578736 100 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 MIR6129-201ENST00000616087 109 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 AP001362.1-201ENST00000625165 124 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 U6.109-201ENST00000636749 87 ntBASIC0.92□□□□□ -2.26
VPS4AQ9UN37 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.119-201ENST00000363301 96 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 SNORA63.5-201ENST00000363548 123 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 U8.6-201ENST00000364939 135 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 RNU6-409P-201ENST00000384114 104 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 RNU6-364P-201ENST00000384387 107 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.507-201ENST00000384500 99 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 RNU1-119P-201ENST00000391122 165 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.91□□□□□ -2.26
VPS4AQ9UN37 RNU6-412P-201ENST00000516434 106 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 AP003327.1-201ENST00000529684 127 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 MIR1273G-201ENST00000577677 100 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS4AQ9UN37 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.91□□□□□ -2.26
VPS4AQ9UN37 HSBP1P2-201ENST00000299671 229 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 MIR373-201ENST00000362273 69 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 RNU6-403P-201ENST00000363163 104 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.360-201ENST00000365512 102 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
VPS4AQ9UN37 MIR34C-201ENST00000384831 77 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 MIR532-201ENST00000385025 91 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 RNU6-733P-201ENST00000410759 104 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.709-201ENST00000516952 92 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 AL590095.2-201ENST00000604136 117 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 AL353765.1-201ENST00000605514 183 ntBASIC0.9□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.49-201ENST00000362714 112 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 RNU4-58P-201ENST00000363192 141 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 RNU6-215P-201ENST00000365169 102 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.377-201ENST00000365644 108 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 MIR605-201ENST00000385078 83 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 MIR520H-201ENST00000385126 88 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 SNORD100-201ENST00000408573 76 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 SNORA7.5-201ENST00000410672 110 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.89□□□□□ -2.27
VPS4AQ9UN37 RNU6-531P-201ENST00000516694 104 ntBASIC0.89□□□□□ -2.27
VPS4AQ9UN37 RNU6-865P-201ENST00000364772 107 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 RNU6-1107P-201ENST00000364817 104 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 RNU6-1201P-201ENST00000384227 107 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 MIR573-201ENST00000384964 99 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 AC244098.3-201ENST00000424803 96 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 MIR4694-201ENST00000578534 80 ntBASIC0.88□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.155-201ENST00000363632 101 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 RNU6-1325P-201ENST00000364905 105 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 RNU6-1014P-201ENST00000383940 103 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.87□□□□□ -2.27
VPS4AQ9UN37 RNU6-448P-201ENST00000517052 107 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 MIR3973-201ENST00000579824 107 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 AC013244.2-201ENST00000603396 103 ntBASIC0.87□□□□□ -2.27
VPS4AQ9UN37 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
VPS4AQ9UN37 RNU6-1099P-201ENST00000363533 107 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 RNA5SP457-201ENST00000363657 124 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 MIR577-201ENST00000385196 96 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 SNORD99-201ENST00000408612 74 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 AC002350.1-201ENST00000490759 375 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 MIR4698-201ENST00000577795 80 ntBASIC0.86□□□□□ -2.27
VPS4AQ9UN37 RNY3P2-201ENST00000362918 102 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.178-201ENST00000363832 102 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 SNORD38.1-201ENST00000363863 68 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.536-201ENST00000384621 113 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 RNY4P18-201ENST00000391107 89 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 AL442128.1-201ENST00000615151 90 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 uc_338.16-201ENST00000621804 95 ntBASIC0.85□□□□□ -2.27
VPS4AQ9UN37 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.56-201ENST00000362798 112 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.247-201ENST00000364500 92 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 SNORA72.6-201ENST00000384520 129 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 SNORD20-201ENST00000384550 80 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 RNU6-291P-201ENST00000384720 107 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 SNRPGP12-201ENST00000449481 213 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 AL512310.12-203ENST00000640543 90 ntBASIC0.84□□□□□ -2.27
VPS4AQ9UN37 Y_RNA.78-201ENST00000362970 110 ntBASIC0.83□□□□□ -2.28
VPS4AQ9UN37 SNORD114-23-201ENST00000363536 72 ntBASIC0.83□□□□□ -2.28
VPS4AQ9UN37 RNU6-755P-201ENST00000364400 103 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 207.4 ms