Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC108059.2-201ENST00000434626 151 ntBASIC0.17□□□□□ -2.38
CPSF3Q9UKF6 RNU7-161P-201ENST00000517289 62 ntBASIC0.17□□□□□ -2.38
CPSF3Q9UKF6 MIR4500-201ENST00000579472 76 ntBASIC0.17□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.98-201ENST00000363109 102 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.150-201ENST00000363562 102 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.328-201ENST00000365208 113 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.423-201ENST00000384057 113 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 MIR548X2-201ENST00000579776 100 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 AC087741.2-201ENST00000619415 172 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 AP001362.1-201ENST00000625165 124 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 MIR4315-1-201ENST00000636800 73 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 MIR4315-2-201ENST00000640925 73 ntBASIC0.16□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.114-201ENST00000363265 113 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.127-201ENST00000363386 109 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 RNU6-726P-201ENST00000364680 107 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.280-201ENST00000364765 112 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.294-201ENST00000364916 102 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 SNORD115-35-201ENST00000365122 82 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.420-201ENST00000384043 110 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 RNU6-886P-201ENST00000384319 105 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 TRAJ51-201ENST00000504127 63 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 AP001328.1-201ENST00000528550 176 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 MIR4752-201ENST00000579672 72 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 RNU1-29P-201ENST00000606574 126 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 MIR6718-201ENST00000616153 80 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 AP001340.1-201ENST00000624405 217 ntBASIC0.15□□□□□ -2.39
CPSF3Q9UKF6 MIR330-201ENST00000362196 94 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 BX276092.1-201ENST00000427368 251 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 RNU7-6P-201ENST00000516845 62 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 MTND5P41-201ENST00000517498 206 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 MIR1273G-201ENST00000577677 100 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 RNU7-10P-201ENST00000607194 63 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 MIR376B-201ENST00000614515 100 ntBASIC0.14□□□□□ -2.39
CPSF3Q9UKF6 RNA5SP403-201ENST00000363598 108 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.270-201ENST00000364693 104 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 RNU6-865P-201ENST00000364772 107 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.400-201ENST00000383963 111 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 MIR635-201ENST00000384830 98 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 MIR569-201ENST00000385228 96 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 RN7SKP19-201ENST00000516016 252 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 AC090425.1-201ENST00000610007 140 ntBASIC0.13□□□□□ -2.39
CPSF3Q9UKF6 SNORA9.1-201ENST00000362412 131 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 SNORD115-19-201ENST00000363098 82 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 SNORD115-18-201ENST00000363293 82 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.215-201ENST00000364204 112 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 RNU4-67P-201ENST00000364569 141 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 SNORD115-17-201ENST00000364612 82 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 RNU7-104P-201ENST00000459398 79 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.773-201ENST00000607168 90 ntBASIC0.12□□□□□ -2.39
CPSF3Q9UKF6 RNU6-647P-201ENST00000364243 107 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 RNU6-848P-201ENST00000515948 107 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 RNU6-617P-201ENST00000516147 107 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 RNU6-473P-201ENST00000516164 107 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 RNU6-1049P-201ENST00000516414 107 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 MIR3163-201ENST00000581592 73 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 AL162376.1-201ENST00000624117 175 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 AC021753.1-201ENST00000635724 168 ntBASIC0.11□□□□□ -2.39
CPSF3Q9UKF6 SNORA42.1-201ENST00000363515 137 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.258-201ENST00000364613 105 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 MIR34C-201ENST00000384831 77 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 MIR599-201ENST00000385069 95 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 MIR760-201ENST00000390220 80 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 MIR548I2-201ENST00000408348 149 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 AC097635.1-201ENST00000450678 155 ntBASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.1□□□□□ -2.39
CPSF3Q9UKF6 Y_RNA.198-201ENST00000364013 98 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.221-201ENST00000364248 96 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 MIR548L-201ENST00000408303 86 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 MIR1263-201ENST00000408324 86 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 RNU6-735P-201ENST00000410612 107 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 RNA5SP272-201ENST00000516095 111 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 RNU6-1232P-201ENST00000516299 86 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 U7.2-201ENST00000607576 63 ntBASIC0.09□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.205-201ENST00000364128 113 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 RNU6-127P-201ENST00000390897 107 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 AL158147.1-201ENST00000443970 75 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 RNU7-129P-201ENST00000516128 62 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 RNU6-521P-201ENST00000516663 105 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 MIR8087-201ENST00000612745 78 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 AC067863.3-201ENST00000624172 122 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 MIR1255B1-201ENST00000636325 63 ntBASIC0.08□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.213-201ENST00000364178 111 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNA5SP128-201ENST00000365305 116 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.360-201ENST00000365512 102 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.362-201ENST00000365518 110 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 SNORA2A-201ENST00000383885 135 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 MIR519A1-201ENST00000385257 85 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNA5SP136-201ENST00000410906 107 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 SNORD63B-201ENST00000411005 70 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNU7-195P-201ENST00000458793 62 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RPL39P34-201ENST00000477141 156 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNU6-781P-201ENST00000516377 101 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNA5SP330-201ENST00000517096 96 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 MIR6779-201ENST00000617283 64 ntBASIC0.07□□□□□ -2.4
CPSF3Q9UKF6 RNU6-170P-201ENST00000362832 104 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 181.2 ms