Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MIR4804-201ENST00000581683 73 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.567-201ENST00000384736 106 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 RNU1-119P-201ENST00000391122 165 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 RNA5SP89-201ENST00000410300 108 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.705-201ENST00000516862 110 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 RNA5SP404-201ENST00000517118 132 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 MIR4421-201ENST00000578133 69 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 MIR548H5-201ENST00000580314 60 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 AC020891.4-201ENST00000605745 93 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 AL512598.1-201ENST00000610158 273 ntBASIC1.11□□□□□ -2.23
VSX1Q9NZR4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.11□□□□□ -2.23
VSX1Q9NZR4 MIR101-2-201ENST00000362195 79 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
VSX1Q9NZR4 SNORA72.6-201ENST00000384520 129 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 RNU6-813P-201ENST00000384691 107 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 RNU6-482P-201ENST00000391068 107 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 SNRPGP12-201ENST00000449481 213 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 RNU7-56P-201ENST00000458744 62 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 OR2A41P-201ENST00000473586 105 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 AC090897.1-201ENST00000580909 226 ntBASIC1.1□□□□□ -2.23
VSX1Q9NZR4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.1□□□□□ -2.23
VSX1Q9NZR4 RNA5SP432-201ENST00000362480 116 ntBASIC1.09□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.09□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.348-201ENST00000365403 103 ntBASIC1.09□□□□□ -2.23
VSX1Q9NZR4 SNORA19.1-201ENST00000410656 129 ntBASIC1.09□□□□□ -2.23
VSX1Q9NZR4 MIR8066-201ENST00000617280 78 ntBASIC1.09□□□□□ -2.23
VSX1Q9NZR4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.08□□□□□ -2.24
VSX1Q9NZR4 MIR378A-201ENST00000362177 66 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 RNU6-369P-201ENST00000362515 102 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 SNORA7.1-201ENST00000363750 139 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.247-201ENST00000364500 92 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 RNU6-1163P-201ENST00000364516 107 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 AC109327.2-201ENST00000448339 378 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 RNU6-109P-201ENST00000516364 107 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 RNU6-184P-201ENST00000516514 107 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 RNU6-531P-201ENST00000516694 104 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 SNORA25.16-201ENST00000516741 121 ntBASIC1.08□□□□□ -2.24
VSX1Q9NZR4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.08□□□□□ -2.24
VSX1Q9NZR4 MIR942-201ENST00000401111 86 ntBASIC1.07□□□□□ -2.24
VSX1Q9NZR4 MIR4777-201ENST00000583710 86 ntBASIC1.07□□□□□ -2.24
VSX1Q9NZR4 AC012531.4-201ENST00000616509 177 ntBASIC1.07□□□□□ -2.24
VSX1Q9NZR4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.342-201ENST00000365352 113 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 MIR520F-201ENST00000384824 87 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 MIR635-201ENST00000384830 98 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 RNU6-887P-201ENST00000410660 100 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 RNU7-102P-201ENST00000458948 62 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 RNU6-237P-201ENST00000515985 71 ntBASIC1.06□□□□□ -2.24
VSX1Q9NZR4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 MIR519A1-201ENST00000385257 85 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 AL603825.1-201ENST00000438481 80 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 RNU6-795P-201ENST00000516323 103 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 RNU6-850P-201ENST00000516934 103 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 AC013244.2-201ENST00000603396 103 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 RNU6-86P-201ENST00000606534 107 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 RMST_2.1-201ENST00000617263 136 ntBASIC1.05□□□□□ -2.24
VSX1Q9NZR4 RNU6-1244P-201ENST00000363614 108 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 SNORD116-10-201ENST00000363791 102 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 RNU6-905P-201ENST00000384434 107 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 SNORD105-201ENST00000386910 85 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 SNORD89-201ENST00000390981 114 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 RNU6-644P-201ENST00000391155 98 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 RNU6-448P-201ENST00000517052 107 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 AC138907.6-201ENST00000568401 126 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 AC138869.1-201ENST00000568623 124 ntBASIC1.04□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.220-201ENST00000364244 109 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 SNORD100-201ENST00000408573 76 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 RNU6-135P-201ENST00000516769 101 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 MIR4661-201ENST00000582720 75 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 AL157834.3-201ENST00000615543 103 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 AL353770.2-201ENST00000620024 78 ntBASIC1.03□□□□□ -2.24
VSX1Q9NZR4 RNU6-1254P-201ENST00000391266 104 ntBASIC1.02□□□□□ -2.25
VSX1Q9NZR4 SNORD124-201ENST00000459577 104 ntBASIC1.02□□□□□ -2.25
VSX1Q9NZR4 RNA5SP458-201ENST00000516188 119 ntBASIC1.02□□□□□ -2.25
VSX1Q9NZR4 Y_RNA.57-201ENST00000362806 113 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 RNU6-640P-201ENST00000363693 105 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 MIR1285-1-201ENST00000408593 84 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 BX276092.1-201ENST00000427368 251 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 AC015818.7-201ENST00000428754 109 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 AC087499.7-201ENST00000441958 109 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 RNA5SP255-201ENST00000516370 107 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 RNA5SP170-201ENST00000517150 101 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 AC091304.10-201ENST00000641554 121 ntBASIC1.01□□□□□ -2.25
VSX1Q9NZR4 RNU4-45P-201ENST00000365469 141 ntBASIC1□□□□□ -2.25
VSX1Q9NZR4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1□□□□□ -2.25
VSX1Q9NZR4 SNORD58A-201ENST00000383875 65 ntBASIC1□□□□□ -2.25
VSX1Q9NZR4 Y_RNA.467-201ENST00000384297 102 ntBASIC1□□□□□ -2.25
VSX1Q9NZR4 MIR520H-201ENST00000385126 88 ntBASIC1□□□□□ -2.25
VSX1Q9NZR4 RNA5SP117-201ENST00000365294 118 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 Y_RNA.369-201ENST00000365568 117 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 RNU6-535P-201ENST00000384722 107 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 RNU6-243P-201ENST00000391140 107 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 RNU7-61P-201ENST00000515897 61 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 216.7 ms