Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-782P-201ENST00000516852 104 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 MIR4503-201ENST00000582187 83 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 MIR599-201ENST00000385069 95 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 BX276092.1-201ENST00000427368 251 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 MTND3P2-201ENST00000438452 342 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 AC104692.1-201ENST00000472406 90 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 TRAJ51-201ENST00000504127 63 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 MIR3658-201ENST00000636291 56 ntBASIC-0.2□□□□□ -2.44
CHMP4AQ9BY43 RNA5SP403-201ENST00000363598 108 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.193-201ENST00000363979 102 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 RNU6-309P-201ENST00000364573 106 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 MIR501-201ENST00000390204 84 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 MIR5706-201ENST00000579841 80 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 U7.6-201ENST00000610841 64 ntBASIC-0.21□□□□□ -2.44
CHMP4AQ9BY43 RNU6-574P-201ENST00000384265 107 ntBASIC-0.22□□□□□ -2.44
CHMP4AQ9BY43 AC130289.1-201ENST00000577321 73 ntBASIC-0.22□□□□□ -2.44
CHMP4AQ9BY43 AC009779.6-201ENST00000603972 165 ntBASIC-0.22□□□□□ -2.44
CHMP4AQ9BY43 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.22□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.23□□□□□ -2.45
CHMP4AQ9BY43 RNU6-269P-201ENST00000391077 97 ntBASIC-0.23□□□□□ -2.45
CHMP4AQ9BY43 AP001362.1-201ENST00000625165 124 ntBASIC-0.23□□□□□ -2.45
CHMP4AQ9BY43 RNY1P11-201ENST00000363759 113 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU6-865P-201ENST00000364772 107 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU6-449P-201ENST00000383914 107 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU6-929P-201ENST00000384429 107 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 MIR548H2-201ENST00000408874 88 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU7-159P-201ENST00000459284 62 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU7-2P-201ENST00000516096 62 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.24□□□□□ -2.45
CHMP4AQ9BY43 RNU4-84P-201ENST00000364200 139 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 AC097635.1-201ENST00000450678 155 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 RNY4P20-201ENST00000516678 93 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 MIR6759-201ENST00000638110 65 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 AC073869.9-201ENST00000641610 120 ntBASIC-0.25□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 RNU6-616P-201ENST00000384353 107 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 SNORD41.1-201ENST00000391000 69 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 AC072026.1-201ENST00000605023 201 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 AL137067.1-201ENST00000615933 120 ntBASIC-0.26□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 AL603914.1-201ENST00000401964 204 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 RNA5SP163-201ENST00000410304 99 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 IGLVI-20-201ENST00000519296 130 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 MIR548AD-201ENST00000584780 82 ntBASIC-0.27□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.28□□□□□ -2.45
CHMP4AQ9BY43 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.28□□□□□ -2.45
CHMP4AQ9BY43 MIR548I2-201ENST00000408348 149 ntBASIC-0.28□□□□□ -2.45
CHMP4AQ9BY43 RNU7-121P-201ENST00000516604 62 ntBASIC-0.28□□□□□ -2.45
CHMP4AQ9BY43 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 SNORA32.1-201ENST00000364514 115 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 AC006210.1-201ENST00000424882 111 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 RNU7-195P-201ENST00000458793 62 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 AP002392.1-201ENST00000537692 208 ntBASIC-0.29□□□□□ -2.46
CHMP4AQ9BY43 SNORD110-201ENST00000408189 75 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 SNORD63B-201ENST00000411005 70 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 NAMPTP3-201ENST00000569273 224 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 AC108081.1-201ENST00000604358 221 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 MIR376B-201ENST00000614515 100 ntBASIC-0.3□□□□□ -2.46
CHMP4AQ9BY43 SNORD115-35-201ENST00000365122 82 ntBASIC-0.31□□□□□ -2.46
CHMP4AQ9BY43 RNU6-756P-201ENST00000383997 107 ntBASIC-0.31□□□□□ -2.46
CHMP4AQ9BY43 RNA5SP395-201ENST00000516567 118 ntBASIC-0.31□□□□□ -2.46
CHMP4AQ9BY43 MIR4677-201ENST00000584153 80 ntBASIC-0.31□□□□□ -2.46
CHMP4AQ9BY43 uc_338.28-201ENST00000612082 187 ntBASIC-0.31□□□□□ -2.46
CHMP4AQ9BY43 SNORD114-31-201ENST00000363219 75 ntBASIC-0.32□□□□□ -2.46
CHMP4AQ9BY43 RNU6-509P-201ENST00000363519 107 ntBASIC-0.32□□□□□ -2.46
CHMP4AQ9BY43 RNU7-13P-201ENST00000516413 62 ntBASIC-0.32□□□□□ -2.46
CHMP4AQ9BY43 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.32□□□□□ -2.46
CHMP4AQ9BY43 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.32□□□□□ -2.46
CHMP4AQ9BY43 RNU6-170P-201ENST00000362832 104 ntBASIC-0.33□□□□□ -2.46
CHMP4AQ9BY43 MIR214-201ENST00000385214 110 ntBASIC-0.33□□□□□ -2.46
CHMP4AQ9BY43 RNA5SP484-201ENST00000458857 111 ntBASIC-0.33□□□□□ -2.46
CHMP4AQ9BY43 RNU7-6P-201ENST00000516845 62 ntBASIC-0.33□□□□□ -2.46
CHMP4AQ9BY43 RNU6-35P-201ENST00000384530 107 ntBASIC-0.34□□□□□ -2.46
CHMP4AQ9BY43 RNU7-165P-201ENST00000458864 60 ntBASIC-0.34□□□□□ -2.46
CHMP4AQ9BY43 MIR3925-201ENST00000584674 77 ntBASIC-0.34□□□□□ -2.46
CHMP4AQ9BY43 RNU6-161P-201ENST00000363051 106 ntBASIC-0.35□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.35□□□□□ -2.47
CHMP4AQ9BY43 RNU4-11P-201ENST00000365287 132 ntBASIC-0.35□□□□□ -2.47
CHMP4AQ9BY43 RNU6-524P-201ENST00000384270 107 ntBASIC-0.35□□□□□ -2.47
CHMP4AQ9BY43 RNA5SP98-201ENST00000363158 137 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.36□□□□□ -2.47
CHMP4AQ9BY43 RNU6-463P-201ENST00000384340 107 ntBASIC-0.36□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms