Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RNY1P5-201ENST00000383890 115 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 SNORD28-201ENST00000384706 75 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.567-201ENST00000384736 106 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 MIR206-201ENST00000384872 86 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RNU6-1321P-201ENST00000390905 107 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 AL158147.1-201ENST00000443970 75 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 AC244505.6-201ENST00000452829 130 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RNU7-48P-201ENST00000458875 63 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RN7SKP19-201ENST00000516016 252 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 RNU7-2P-201ENST00000516096 62 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 MIR548H5-201ENST00000580314 60 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 MIR4514-201ENST00000581410 57 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 MIR101-2-201ENST00000362195 79 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 SNORD115-35-201ENST00000365122 82 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.488-201ENST00000384403 102 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 RNU7-200P-201ENST00000516105 62 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 MTND5P41-201ENST00000517498 206 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 IGKV1-22-201ENST00000524313 326 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 AC022523.2-201ENST00000561045 150 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 MIR3163-201ENST00000581592 73 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 AC021753.1-201ENST00000635724 168 ntBASIC0.33□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.8-201ENST00000362353 102 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 RNU2-59P-201ENST00000410482 191 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 RNA5SP268-201ENST00000516828 124 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 AC138869.1-201ENST00000568623 124 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 AC087741.2-201ENST00000619415 172 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 TUG1_4.1-201ENST00000619464 181 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 AP001362.1-201ENST00000625165 124 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 AC091304.10-201ENST00000641554 121 ntBASIC0.32□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.127-201ENST00000363386 109 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.170-201ENST00000363746 110 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.328-201ENST00000365208 113 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 MIR548I2-201ENST00000408348 149 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 AC108740.1-201ENST00000498629 225 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 RNU5E-3P-201ENST00000515913 68 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 SNORA62.5-201ENST00000516634 120 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 AC105081.1-201ENST00000617727 106 ntBASIC0.31□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.213-201ENST00000364178 111 ntBASIC0.3□□□□□ -2.36
CCDC3Q9BQI4 RNU6-616P-201ENST00000384353 107 ntBASIC0.3□□□□□ -2.36
CCDC3Q9BQI4 MIR759-201ENST00000390224 91 ntBASIC0.3□□□□□ -2.36
CCDC3Q9BQI4 RNA5SP245-201ENST00000364239 121 ntBASIC0.29□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.448-201ENST00000384185 108 ntBASIC0.29□□□□□ -2.36
CCDC3Q9BQI4 MIR519A1-201ENST00000385257 85 ntBASIC0.29□□□□□ -2.36
CCDC3Q9BQI4 AC244669.1-204ENST00000621564 178 ntBASIC0.29□□□□□ -2.36
CCDC3Q9BQI4 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
CCDC3Q9BQI4 MT-TI-201ENST00000387365 69 ntBASIC0.28□□□□□ -2.36
CCDC3Q9BQI4 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
CCDC3Q9BQI4 RNU7-6P-201ENST00000516845 62 ntBASIC0.28□□□□□ -2.36
CCDC3Q9BQI4 AC023932.2-201ENST00000603176 175 ntBASIC0.28□□□□□ -2.36
CCDC3Q9BQI4 MIR103A1-201ENST00000362165 78 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 RNA5SP257-201ENST00000363023 116 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 RNU6-865P-201ENST00000364772 107 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.343-201ENST00000365354 112 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.568-201ENST00000384742 113 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 MIR548I1-201ENST00000408810 149 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 SNRPGP12-201ENST00000449481 213 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 SNORA25.18-201ENST00000607153 114 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 MIR7107-201ENST00000611489 80 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 MIR2909-201ENST00000617113 69 ntBASIC0.27□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.506-201ENST00000384494 102 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 MIR635-201ENST00000384830 98 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 SNORA40-201ENST00000388090 126 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 RNA5SP227-201ENST00000516184 113 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 RNU6-426P-201ENST00000516464 97 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 MIR3668-201ENST00000582138 75 ntBASIC0.26□□□□□ -2.37
CCDC3Q9BQI4 SNORA63.5-201ENST00000363548 123 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 RNU4-67P-201ENST00000364569 141 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 RNU6-571P-201ENST00000384128 107 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 RNU6-1307P-201ENST00000391012 103 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 MTND4LP9-201ENST00000427694 174 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 SUMO1P3-201ENST00000439961 304 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 RNU6-255P-201ENST00000516957 105 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 MIR4500-201ENST00000579472 76 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 MIR376B-201ENST00000614515 100 ntBASIC0.25□□□□□ -2.37
CCDC3Q9BQI4 RNA5SP403-201ENST00000363598 108 ntBASIC0.24□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.360-201ENST00000365512 102 ntBASIC0.24□□□□□ -2.37
CCDC3Q9BQI4 AC097635.1-201ENST00000450678 155 ntBASIC0.24□□□□□ -2.37
CCDC3Q9BQI4 SNORD115-24-201ENST00000363528 82 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 RNY4P6-201ENST00000363667 96 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.294-201ENST00000364916 102 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 MIR539-201ENST00000365690 78 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.528-201ENST00000384575 108 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 MIR548D2-201ENST00000384955 97 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 RNU6-907P-201ENST00000390924 102 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 MIR1263-201ENST00000408324 86 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 Y_RNA.773-201ENST00000607168 90 ntBASIC0.23□□□□□ -2.37
CCDC3Q9BQI4 RNU6-726P-201ENST00000364680 107 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 SNORD58C-201ENST00000365223 64 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 SNORD38.2-201ENST00000384470 69 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 RNU6-1018P-201ENST00000516577 106 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 RNU6-521P-201ENST00000516663 105 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 RNU6-1234P-201ENST00000516877 103 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 MIR4315-1-201ENST00000636800 73 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 208.4 ms