Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-480P-201ENST00000384332 107 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 MIR942-201ENST00000401111 86 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 MIR1827-201ENST00000408549 66 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 SNRPGP12-201ENST00000449481 213 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 SNORD92-201ENST00000585078 85 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 AC006254.2-201ENST00000603259 279 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 AC008608.1-201ENST00000603910 127 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 RNU1-17P-201ENST00000363022 152 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 SNORD48-201ENST00000364953 64 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.369-201ENST00000365568 117 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 SNORD58A-201ENST00000383875 65 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 RNU6-571P-201ENST00000384128 107 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 RNU6-997P-201ENST00000384725 107 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 SNORD100-201ENST00000408573 76 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 AL645939.4-201ENST00000604495 135 ntBASIC1.34□□□□□ -2.19
CCDC140Q96MF4 MIR635-201ENST00000384830 98 ntBASIC1.33□□□□□ -2.2
CCDC140Q96MF4 RNA5SP404-201ENST00000517118 132 ntBASIC1.33□□□□□ -2.2
CCDC140Q96MF4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.33□□□□□ -2.2
CCDC140Q96MF4 AC025521.1-201ENST00000621624 286 ntBASIC1.33□□□□□ -2.2
CCDC140Q96MF4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
CCDC140Q96MF4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC140Q96MF4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC140Q96MF4 RNU6-294P-201ENST00000364999 102 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 MIR516A2-201ENST00000384888 90 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 MIR516A1-201ENST00000385033 90 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 FABP5P4-201ENST00000437203 171 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 RNU6-765P-201ENST00000516916 99 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 MIR3122-201ENST00000577243 73 ntBASIC1.32□□□□□ -2.2
CCDC140Q96MF4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 RNU6-535P-201ENST00000384722 107 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 MIR19B1-201ENST00000384829 87 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 MIR520H-201ENST00000385126 88 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 RNU7-106P-201ENST00000459514 67 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 AL513043.2-201ENST00000573941 143 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 MIR548H5-201ENST00000580314 60 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 MIR8081-201ENST00000611533 95 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 AL136317.1-201ENST00000612653 226 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 RMST_2.1-201ENST00000617263 136 ntBASIC1.31□□□□□ -2.2
CCDC140Q96MF4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.3□□□□□ -2.2
CCDC140Q96MF4 SNORD63B-201ENST00000411005 70 ntBASIC1.3□□□□□ -2.2
CCDC140Q96MF4 SNORA25.15-201ENST00000516487 89 ntBASIC1.3□□□□□ -2.2
CCDC140Q96MF4 RNU6-844P-201ENST00000517175 102 ntBASIC1.3□□□□□ -2.2
CCDC140Q96MF4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC140Q96MF4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.29□□□□□ -2.2
CCDC140Q96MF4 RNU6-955P-201ENST00000410497 104 ntBASIC1.29□□□□□ -2.2
CCDC140Q96MF4 U7.7-201ENST00000459276 60 ntBASIC1.29□□□□□ -2.2
CCDC140Q96MF4 TRAJ51-201ENST00000504127 63 ntBASIC1.29□□□□□ -2.2
CCDC140Q96MF4 MIR4255-201ENST00000579351 72 ntBASIC1.29□□□□□ -2.2
CCDC140Q96MF4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC140Q96MF4 MIR200A-201ENST00000384875 90 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 AC092628.1-201ENST00000436250 252 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 RNU6-448P-201ENST00000517052 107 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 AC026421.1-201ENST00000519101 163 ntBASIC1.28□□□□□ -2.2
CCDC140Q96MF4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC140Q96MF4 SNORD116-10-201ENST00000363791 102 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 RNU6-1134P-201ENST00000365156 101 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 RNA5SP190-201ENST00000365222 118 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 SNORD105-201ENST00000386910 85 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.27□□□□□ -2.21
CCDC140Q96MF4 MIR502-201ENST00000606349 86 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 RNU7-10P-201ENST00000607194 63 ntBASIC1.27□□□□□ -2.21
CCDC140Q96MF4 RNA5SP245-201ENST00000364239 121 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 SNORD114-24-201ENST00000365029 72 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 RNU6-291P-201ENST00000384720 107 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 RNU6-243P-201ENST00000391140 107 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 RNU6-1254P-201ENST00000391266 104 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 AC108667.1-201ENST00000428618 249 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 RNU7-195P-201ENST00000458793 62 ntBASIC1.26□□□□□ -2.21
CCDC140Q96MF4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CCDC140Q96MF4 Y_RNA.609-201ENST00000410669 89 ntBASIC1.25□□□□□ -2.21
CCDC140Q96MF4 MIR4679-1-201ENST00000637619 75 ntBASIC1.25□□□□□ -2.21
CCDC140Q96MF4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
CCDC140Q96MF4 SNORD36A-201ENST00000362874 73 ntBASIC1.24□□□□□ -2.21
CCDC140Q96MF4 RNU1-124P-201ENST00000363861 145 ntBASIC1.24□□□□□ -2.21
CCDC140Q96MF4 RNA5SP363-201ENST00000365072 115 ntBASIC1.24□□□□□ -2.21
CCDC140Q96MF4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.23□□□□□ -2.21
CCDC140Q96MF4 MIR378A-201ENST00000362177 66 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 SNORD13-201ENST00000459299 104 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 RNU6-1053P-201ENST00000515930 101 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 MIR4498-201ENST00000577599 66 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 AL359821.1-201ENST00000605519 182 ntBASIC1.23□□□□□ -2.21
CCDC140Q96MF4 RNA5SP117-201ENST00000365294 118 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 AP003327.1-201ENST00000529684 127 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 AC138907.6-201ENST00000568401 126 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 AC138869.1-201ENST00000568623 124 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 BX248123.2-201ENST00000606318 124 ntBASIC1.22□□□□□ -2.21
CCDC140Q96MF4 RNY1P4-201ENST00000384595 115 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 SNORA67.5-201ENST00000391036 107 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 SNORA17.3-201ENST00000391159 129 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 snoU13.11-201ENST00000459219 104 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 SNORA31.14-201ENST00000516728 116 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 AC025627.3-201ENST00000582078 182 ntBASIC1.21□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.4-201ENST00000362333 112 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms