Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR181B2-201ENST00000385004 89 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 SNORA67.6-201ENST00000391093 99 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 MIR1255A-201ENST00000408338 113 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 RNU11-2P-201ENST00000516898 142 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 MIR4264-201ENST00000583520 66 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
COL4A3Q01955 Y_RNA.73-201ENST00000362910 113 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 RNU6-219P-201ENST00000364728 107 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 MIR520E-201ENST00000384867 87 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 MT-TN-201ENST00000387400 73 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 snoU13.9-201ENST00000458927 103 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 AC079140.2-201ENST00000506193 142 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 MIR6078-201ENST00000611069 100 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 MIR8063-201ENST00000621930 81 ntBASIC1.49□□□□□ -2.17
COL4A3Q01955 SNORD114-27-201ENST00000363766 70 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 Y_RNA.609-201ENST00000410669 89 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 snoU13.25-201ENST00000458945 104 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 RNA5SP436-201ENST00000516020 115 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR4299-201ENST00000577899 72 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 RNU6-1244P-201ENST00000363614 108 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR17-201ENST00000385012 84 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR563-201ENST00000385080 79 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 RNU6-613P-201ENST00000410412 108 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 RPS27P21-201ENST00000486977 252 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR2115-201ENST00000516657 100 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 AL513043.2-201ENST00000573941 143 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR6840-201ENST00000611937 71 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 MIR3202-2-201ENST00000635980 79 ntBASIC1.48□□□□□ -2.17
COL4A3Q01955 RNU6-228P-201ENST00000362700 106 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 Y_RNA.115-201ENST00000363272 98 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 SNORA2B-201ENST00000384583 137 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 Y_RNA.611-201ENST00000410682 108 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.47□□□□□ -2.17
COL4A3Q01955 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 RNU7-171P-201ENST00000459581 62 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 SNORA44.1-201ENST00000517031 108 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 AP003716.2-201ENST00000528260 108 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 AC138749.4-201ENST00000563970 127 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 MIR5588-201ENST00000581890 63 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 MIR6740-201ENST00000618268 113 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 MIR6086-201ENST00000638065 55 ntBASIC1.47□□□□□ -2.17
COL4A3Q01955 HSBP1P2-201ENST00000299671 229 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 AL596028.1-201ENST00000326971 197 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 RNU6-633P-201ENST00000362612 103 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 SNORD33-201ENST00000362761 85 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 RNU6-205P-201ENST00000390858 107 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 MIR1304-201ENST00000408243 91 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 AL161932.1-201ENST00000437408 146 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 RPL30P7-201ENST00000479312 323 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 MIR8066-201ENST00000617280 78 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 MIR6516-201ENST00000630554 81 ntBASIC1.46□□□□□ -2.18
COL4A3Q01955 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL4A3Q01955 RNA5SP264-201ENST00000363115 107 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 Y_RNA.313-201ENST00000365095 103 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 Y_RNA.426-201ENST00000384068 113 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 MIR320A-201ENST00000385302 82 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 MIR1185-1-201ENST00000408598 86 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
COL4A3Q01955 MIR30D-201ENST00000362283 70 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 Y_RNA.119-201ENST00000363301 96 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 RNU6-509P-201ENST00000363519 107 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 Y_RNA.168-201ENST00000363740 102 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 Y_RNA.437-201ENST00000384113 113 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 MIR30A-201ENST00000385092 71 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
COL4A3Q01955 RNU6-1165P-201ENST00000410119 107 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 AC090897.1-201ENST00000580909 226 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 AC006160.2-201ENST00000637708 154 ntBASIC1.45□□□□□ -2.18
COL4A3Q01955 RNA5SP133-201ENST00000363368 119 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 MIR216A-201ENST00000385063 110 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 BX276092.1-201ENST00000427368 251 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 RNU7-62P-201ENST00000458856 62 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 AC004223.1-201ENST00000479840 271 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 RNU6-638P-201ENST00000516582 104 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 MIR4666B-201ENST00000578142 81 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 AC025521.1-201ENST00000621624 286 ntBASIC1.44□□□□□ -2.18
COL4A3Q01955 AL359851.1-201ENST00000569460 4997 ntBASIC1.43□□□□□ -2.18
COL4A3Q01955 AC080100.1-201ENST00000624239 5356 ntBASIC1.43□□□□□ -2.18
COL4A3Q01955 RNU6-580P-201ENST00000365159 107 ntBASIC1.43□□□□□ -2.18
COL4A3Q01955 MIR3122-201ENST00000577243 73 ntBASIC1.43□□□□□ -2.18
COL4A3Q01955 MIR548BB-201ENST00000626714 66 ntBASIC1.43□□□□□ -2.18
COL4A3Q01955 RNU6-787P-201ENST00000384032 107 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MT-TF-201ENST00000387314 71 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 Y_RNA.607-201ENST00000410597 98 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR18B-201ENST00000454574 71 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 AC005908.1-201ENST00000468701 347 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR1273G-201ENST00000577677 100 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR3664-201ENST00000579074 99 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR3937-201ENST00000580135 106 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR4491-201ENST00000581087 68 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 AC020891.4-201ENST00000605745 93 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 U6.109-201ENST00000636749 87 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR103A2-201ENST00000362154 78 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 Y_RNA.57-201ENST00000362806 113 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 VTRNA1-3-201ENST00000365645 89 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 MIR193B-201ENST00000384907 83 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 RNU4-83P-201ENST00000410863 133 ntBASIC1.42□□□□□ -2.18
COL4A3Q01955 RNU6-850P-201ENST00000516934 103 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 258 ms