Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR3671-201ENST00000580455 88 ntBASIC0.51□□□□□ -2.33
CTCFP49711 AC021753.1-201ENST00000635724 168 ntBASIC0.51□□□□□ -2.33
CTCFP49711 Y_RNA.215-201ENST00000364204 112 ntBASIC0.5□□□□□ -2.33
CTCFP49711 Y_RNA.420-201ENST00000384043 110 ntBASIC0.5□□□□□ -2.33
CTCFP49711 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.5□□□□□ -2.33
CTCFP49711 SNORA68.3-201ENST00000515906 83 ntBASIC0.5□□□□□ -2.33
CTCFP49711 Y_RNA.697-201ENST00000516776 113 ntBASIC0.5□□□□□ -2.33
CTCFP49711 IGKV1-22-201ENST00000524313 326 ntBASIC0.5□□□□□ -2.33
CTCFP49711 AP001328.1-201ENST00000528550 176 ntBASIC0.5□□□□□ -2.33
CTCFP49711 AC105081.1-201ENST00000617727 106 ntBASIC0.5□□□□□ -2.33
CTCFP49711 AC090625.1-201ENST00000357130 210 ntBASIC0.49□□□□□ -2.33
CTCFP49711 RNU4-58P-201ENST00000363192 141 ntBASIC0.49□□□□□ -2.33
CTCFP49711 Y_RNA.174-201ENST00000363781 105 ntBASIC0.49□□□□□ -2.33
CTCFP49711 Y_RNA.180-201ENST00000363867 113 ntBASIC0.49□□□□□ -2.33
CTCFP49711 RNU6-535P-201ENST00000384722 107 ntBASIC0.49□□□□□ -2.33
CTCFP49711 DEFB131E-201ENST00000532329 154 ntBASIC0.49□□□□□ -2.33
CTCFP49711 MIR6718-201ENST00000616153 80 ntBASIC0.49□□□□□ -2.33
CTCFP49711 SNORA36.1-201ENST00000363424 132 ntBASIC0.48□□□□□ -2.33
CTCFP49711 RNA5SP368-201ENST00000364298 116 ntBASIC0.48□□□□□ -2.33
CTCFP49711 Y_RNA.567-201ENST00000384736 106 ntBASIC0.48□□□□□ -2.33
CTCFP49711 Y_RNA.114-201ENST00000363265 113 ntBASIC0.47□□□□□ -2.33
CTCFP49711 Y_RNA.464-201ENST00000384282 110 ntBASIC0.47□□□□□ -2.33
CTCFP49711 MIR206-201ENST00000384872 86 ntBASIC0.47□□□□□ -2.33
CTCFP49711 RNU6-469P-201ENST00000516253 101 ntBASIC0.47□□□□□ -2.33
CTCFP49711 MIRLET7D-201ENST00000362263 87 ntBASIC0.46□□□□□ -2.34
CTCFP49711 Y_RNA.119-201ENST00000363301 96 ntBASIC0.46□□□□□ -2.34
CTCFP49711 RNY1P2-201ENST00000364820 117 ntBASIC0.46□□□□□ -2.34
CTCFP49711 SNORA8.2-201ENST00000384372 139 ntBASIC0.46□□□□□ -2.34
CTCFP49711 MIR518A1-201ENST00000385068 85 ntBASIC0.46□□□□□ -2.34
CTCFP49711 RNU6-1321P-201ENST00000390905 107 ntBASIC0.46□□□□□ -2.34
CTCFP49711 SNORD77B-201ENST00000391112 67 ntBASIC0.46□□□□□ -2.34
CTCFP49711 SNORA40.8-201ENST00000411034 126 ntBASIC0.46□□□□□ -2.34
CTCFP49711 RNA5SP67-201ENST00000516422 131 ntBASIC0.46□□□□□ -2.34
CTCFP49711 RNU6-1212P-201ENST00000517023 104 ntBASIC0.46□□□□□ -2.34
CTCFP49711 MIR5190-201ENST00000581537 80 ntBASIC0.46□□□□□ -2.34
CTCFP49711 SNORA9.1-201ENST00000362412 131 ntBASIC0.45□□□□□ -2.34
CTCFP49711 RNU6-135P-201ENST00000516769 101 ntBASIC0.45□□□□□ -2.34
CTCFP49711 IGLVI-20-201ENST00000519296 130 ntBASIC0.45□□□□□ -2.34
CTCFP49711 SNORA25.18-201ENST00000607153 114 ntBASIC0.45□□□□□ -2.34
CTCFP49711 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.45□□□□□ -2.34
CTCFP49711 SNORD118-201ENST00000363593 134 ntBASIC0.44□□□□□ -2.34
CTCFP49711 RNA5SP245-201ENST00000364239 121 ntBASIC0.44□□□□□ -2.34
CTCFP49711 RNU6-647P-201ENST00000364243 107 ntBASIC0.44□□□□□ -2.34
CTCFP49711 Y_RNA.488-201ENST00000384403 102 ntBASIC0.44□□□□□ -2.34
CTCFP49711 MT-TI-201ENST00000387365 69 ntBASIC0.44□□□□□ -2.34
CTCFP49711 RN7SKP19-201ENST00000516016 252 ntBASIC0.44□□□□□ -2.34
CTCFP49711 RNU7-200P-201ENST00000516105 62 ntBASIC0.44□□□□□ -2.34
CTCFP49711 RNU6-426P-201ENST00000516464 97 ntBASIC0.44□□□□□ -2.34
CTCFP49711 U7.2-201ENST00000607576 63 ntBASIC0.44□□□□□ -2.34
CTCFP49711 Y_RNA.448-201ENST00000384185 108 ntBASIC0.43□□□□□ -2.34
CTCFP49711 RNU6-616P-201ENST00000384353 107 ntBASIC0.43□□□□□ -2.34
CTCFP49711 RNU6-1307P-201ENST00000391012 103 ntBASIC0.43□□□□□ -2.34
CTCFP49711 SNORD71-201ENST00000411292 86 ntBASIC0.43□□□□□ -2.34
CTCFP49711 SNRPGP12-201ENST00000449481 213 ntBASIC0.43□□□□□ -2.34
CTCFP49711 RNA5SP272-201ENST00000516095 111 ntBASIC0.43□□□□□ -2.34
CTCFP49711 SNORA63.5-201ENST00000363548 123 ntBASIC0.42□□□□□ -2.34
CTCFP49711 MIRLET7F2-201ENST00000385277 83 ntBASIC0.42□□□□□ -2.34
CTCFP49711 RNU7-48P-201ENST00000458875 63 ntBASIC0.42□□□□□ -2.34
CTCFP49711 RNU7-2P-201ENST00000516096 62 ntBASIC0.42□□□□□ -2.34
CTCFP49711 RNU6-255P-201ENST00000516957 105 ntBASIC0.42□□□□□ -2.34
CTCFP49711 MIR4723-201ENST00000585070 81 ntBASIC0.42□□□□□ -2.34
CTCFP49711 MTRNR2L2-201ENST00000604882 87 ntBASIC0.42□□□□□ -2.34
CTCFP49711 AC087741.2-201ENST00000619415 172 ntBASIC0.42□□□□□ -2.34
CTCFP49711 MIR6828-201ENST00000636181 60 ntBASIC0.42□□□□□ -2.34
CTCFP49711 MIR101-2-201ENST00000362195 79 ntBASIC0.41□□□□□ -2.34
CTCFP49711 Y_RNA.56-201ENST00000362798 112 ntBASIC0.41□□□□□ -2.34
CTCFP49711 RNU6-429P-201ENST00000384582 108 ntBASIC0.41□□□□□ -2.34
CTCFP49711 RNA5SP266-201ENST00000410273 108 ntBASIC0.41□□□□□ -2.34
CTCFP49711 AL158147.1-201ENST00000443970 75 ntBASIC0.41□□□□□ -2.34
CTCFP49711 SCARNA16.5-201ENST00000517114 183 ntBASIC0.41□□□□□ -2.34
CTCFP49711 RNA5SP47-201ENST00000517230 109 ntBASIC0.41□□□□□ -2.34
CTCFP49711 MIR4639-201ENST00000584938 69 ntBASIC0.41□□□□□ -2.34
CTCFP49711 SNORD44.1-201ENST00000363202 61 ntBASIC0.4□□□□□ -2.35
CTCFP49711 SNORD28-201ENST00000384706 75 ntBASIC0.4□□□□□ -2.35
CTCFP49711 RNA5SP268-201ENST00000516828 124 ntBASIC0.4□□□□□ -2.35
CTCFP49711 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.4□□□□□ -2.35
CTCFP49711 SUMO1P3-201ENST00000439961 304 ntBASIC0.39□□□□□ -2.35
CTCFP49711 RNU7-6P-201ENST00000516845 62 ntBASIC0.39□□□□□ -2.35
CTCFP49711 MIR103A1-201ENST00000362165 78 ntBASIC0.38□□□□□ -2.35
CTCFP49711 SNORD115-19-201ENST00000363098 82 ntBASIC0.38□□□□□ -2.35
CTCFP49711 Y_RNA.98-201ENST00000363109 102 ntBASIC0.38□□□□□ -2.35
CTCFP49711 SNORD115-18-201ENST00000363293 82 ntBASIC0.38□□□□□ -2.35
CTCFP49711 Y_RNA.198-201ENST00000364013 98 ntBASIC0.38□□□□□ -2.35
CTCFP49711 RNU6-1229P-201ENST00000364295 107 ntBASIC0.38□□□□□ -2.35
CTCFP49711 SNORD115-17-201ENST00000364612 82 ntBASIC0.38□□□□□ -2.35
CTCFP49711 SNORD115-35-201ENST00000365122 82 ntBASIC0.38□□□□□ -2.35
CTCFP49711 RNU6-1327P-201ENST00000365302 105 ntBASIC0.38□□□□□ -2.35
CTCFP49711 Y_RNA.506-201ENST00000384494 102 ntBASIC0.38□□□□□ -2.35
CTCFP49711 RNA5SP136-201ENST00000410906 107 ntBASIC0.38□□□□□ -2.35
CTCFP49711 MIR3163-201ENST00000581592 73 ntBASIC0.38□□□□□ -2.35
CTCFP49711 MIR7107-201ENST00000611489 80 ntBASIC0.38□□□□□ -2.35
CTCFP49711 AP001362.1-201ENST00000625165 124 ntBASIC0.38□□□□□ -2.35
CTCFP49711 Y_RNA.127-201ENST00000363386 109 ntBASIC0.37□□□□□ -2.35
CTCFP49711 Y_RNA.328-201ENST00000365208 113 ntBASIC0.37□□□□□ -2.35
CTCFP49711 RNY1P5-201ENST00000383890 115 ntBASIC0.37□□□□□ -2.35
CTCFP49711 RNU6-907P-201ENST00000390924 102 ntBASIC0.37□□□□□ -2.35
CTCFP49711 MIR1263-201ENST00000408324 86 ntBASIC0.37□□□□□ -2.35
CTCFP49711 MTND4LP9-201ENST00000427694 174 ntBASIC0.37□□□□□ -2.35
CTCFP49711 AC244505.6-201ENST00000452829 130 ntBASIC0.37□□□□□ -2.35
CTCFP49711 RNU6-781P-201ENST00000516377 101 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms