Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR1285-1-201ENST00000408593 84 ntBASIC1.48□□□□□ -2.17
COL3A1P02461 AC027119.1-201ENST00000440877 241 ntBASIC1.48□□□□□ -2.17
COL3A1P02461 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.48□□□□□ -2.17
COL3A1P02461 RNY1P2-201ENST00000364820 117 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 RNU6-949P-201ENST00000384040 107 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 MIR194-1-201ENST00000384892 85 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 RNA5SP450-201ENST00000411206 102 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 SNORA31.25-201ENST00000517242 134 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 AC141846.1-201ENST00000568348 142 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.47□□□□□ -2.17
COL3A1P02461 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
COL3A1P02461 MIR8066-201ENST00000617280 78 ntBASIC1.47□□□□□ -2.17
COL3A1P02461 HSBP1P2-201ENST00000299671 229 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 SNORD114-27-201ENST00000363766 70 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 Y_RNA.178-201ENST00000363832 102 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 Y_RNA.316-201ENST00000365118 111 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 SNORA2B-201ENST00000384583 137 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 RNU6-519P-201ENST00000410590 108 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 AL591704.2-201ENST00000421658 181 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 AC073261.1-201ENST00000429409 121 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 RNU7-41P-201ENST00000515917 61 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 AL662814.1-201ENST00000617364 121 ntBASIC1.46□□□□□ -2.18
COL3A1P02461 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
COL3A1P02461 RNA5SP212-201ENST00000391223 107 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 SNORD23.1-201ENST00000408212 104 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 MIR1236-201ENST00000408340 102 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 AC244023.1-201ENST00000426884 112 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 snoU13.2-201ENST00000459201 104 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.45□□□□□ -2.18
COL3A1P02461 MIR4500-201ENST00000579472 76 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 AC242498.1-201ENST00000604134 111 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 PRELID3BP2-201ENST00000605362 201 ntBASIC1.45□□□□□ -2.18
COL3A1P02461 SNORA3A-201ENST00000364113 130 ntBASIC1.44□□□□□ -2.18
COL3A1P02461 SNORD115-27-201ENST00000364430 82 ntBASIC1.44□□□□□ -2.18
COL3A1P02461 RNU6-396P-201ENST00000365369 105 ntBASIC1.44□□□□□ -2.18
COL3A1P02461 RNA5SP259-201ENST00000365541 109 ntBASIC1.44□□□□□ -2.18
COL3A1P02461 AL357312.1-201ENST00000603879 298 ntBASIC1.44□□□□□ -2.18
COL3A1P02461 Y_RNA.94-201ENST00000363068 106 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 RNA5SP48-201ENST00000363969 126 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 MIR513A1-201ENST00000385138 129 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.43□□□□□ -2.18
COL3A1P02461 RNU6-65P-201ENST00000516332 98 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 MIR5000-201ENST00000577717 103 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
COL3A1P02461 MIR373-201ENST00000362273 69 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 AL356379.1-201ENST00000414105 126 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 AC140658.3-201ENST00000567603 271 ntBASIC1.43□□□□□ -2.18
COL3A1P02461 Y_RNA.57-201ENST00000362806 113 ntBASIC1.42□□□□□ -2.18
COL3A1P02461 MIR588-201ENST00000384900 83 ntBASIC1.42□□□□□ -2.18
COL3A1P02461 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.42□□□□□ -2.18
COL3A1P02461 JTBP1-201ENST00000441314 247 ntBASIC1.42□□□□□ -2.18
COL3A1P02461 RNU7-193P-201ENST00000516723 65 ntBASIC1.42□□□□□ -2.18
COL3A1P02461 RNA5SP133-201ENST00000363368 119 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 RNU4-38P-201ENST00000364472 129 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 MIR17-201ENST00000385012 84 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 SNORD4B-201ENST00000459083 72 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 SNORD111.1-201ENST00000516421 86 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 RNU2-19P-201ENST00000517288 84 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 AC138749.4-201ENST00000563970 127 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 AC090897.1-201ENST00000580909 226 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 AC020891.4-201ENST00000605745 93 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 AL096861.1-201ENST00000610899 123 ntBASIC1.41□□□□□ -2.18
COL3A1P02461 SNORA16B-201ENST00000364674 135 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 RNU6-571P-201ENST00000384128 107 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 AL161935.2-201ENST00000414627 60 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 SNORA25.13-201ENST00000516395 103 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 MIR4264-201ENST00000583520 66 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.4□□□□□ -2.19
COL3A1P02461 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 GHRLOS.1-201ENST00000610995 70 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 U7.4-201ENST00000614961 63 ntBASIC1.4□□□□□ -2.19
COL3A1P02461 Y_RNA.119-201ENST00000363301 96 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 AC087499.7-201ENST00000441958 109 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 HSPE1P24-201ENST00000450782 238 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 AL133373.1-201ENST00000497098 94 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 RNU6-850P-201ENST00000516934 103 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 MIR4712-201ENST00000583750 82 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 MIR3192-201ENST00000584920 77 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 SNORD114-21-201ENST00000606412 72 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.39□□□□□ -2.19
COL3A1P02461 RNU6-315P-201ENST00000362666 107 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 RNU4-32P-201ENST00000363404 141 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 MIR563-201ENST00000385080 79 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 MT-TN-201ENST00000387400 73 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 MIR676-201ENST00000390702 67 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 RNU4-83P-201ENST00000410863 133 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 RNU7-153P-201ENST00000516455 62 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 RNU6-922P-201ENST00000516753 99 ntBASIC1.38□□□□□ -2.19
COL3A1P02461 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
COL3A1P02461 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
COL3A1P02461 RNU6-1094P-201ENST00000362416 104 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 RNU6-624P-201ENST00000363411 107 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 RNU6-129P-201ENST00000391022 107 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 BX276092.1-201ENST00000427368 251 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 RNU6-947P-201ENST00000516264 106 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 MIR2115-201ENST00000516657 100 ntBASIC1.37□□□□□ -2.19
COL3A1P02461 RNU11-2P-201ENST00000516898 142 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms