Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 RNU1-17P-201ENST00000363022 152 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-652P-201ENST00000365488 107 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-524P-201ENST00000384270 107 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-482P-201ENST00000391068 107 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 HMGN2P38-201ENST00000423806 265 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 AL161932.1-201ENST00000437408 146 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 AC079804.2-201ENST00000490376 200 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 RN7SL274P-201ENST00000492268 272 ntBASIC2.27□□□□□ -2.05
CHMP3Q9Y3E7 Y_RNA.119-201ENST00000363301 96 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-279P-201ENST00000391297 101 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 SNRPGP12-201ENST00000449481 213 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-857P-201ENST00000515893 110 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 MIR2115-201ENST00000516657 100 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.26□□□□□ -2.05
CHMP3Q9Y3E7 MIR103A2-201ENST00000362154 78 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 MIR302D-201ENST00000362275 68 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 SNORA16.1-201ENST00000364597 132 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 AC087499.7-201ENST00000441958 109 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 SNORA25.15-201ENST00000516487 89 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-850P-201ENST00000516934 103 ntBASIC2.25□□□□□ -2.05
CHMP3Q9Y3E7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 Y_RNA.57-201ENST00000362806 113 ntBASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 MT-TN-201ENST00000387400 73 ntBASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 Y_RNA.607-201ENST00000410597 98 ntBASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 AL133373.1-201ENST00000497098 94 ntBASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.24□□□□□ -2.05
CHMP3Q9Y3E7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 RNA5SP264-201ENST00000363115 107 ntBASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 RNU6-519P-201ENST00000410590 108 ntBASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 MIR4448-201ENST00000584360 86 ntBASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 MIR8066-201ENST00000617280 78 ntBASIC2.23□□□□□ -2.05
CHMP3Q9Y3E7 Y_RNA.221-201ENST00000364248 96 ntBASIC2.22□□□□□ -2.05
CHMP3Q9Y3E7 SNORD1A-201ENST00000364968 72 ntBASIC2.22□□□□□ -2.05
CHMP3Q9Y3E7 MIR519C-201ENST00000385053 87 ntBASIC2.22□□□□□ -2.05
CHMP3Q9Y3E7 RPL30P7-201ENST00000479312 323 ntBASIC2.22□□□□□ -2.05
CHMP3Q9Y3E7 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 Y_RNA.316-201ENST00000365118 111 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 RNA5SP190-201ENST00000365222 118 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 snoU13.9-201ENST00000458927 103 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 SNORD13-201ENST00000459299 104 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 AC023790.1-201ENST00000482174 347 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 RNU7-153P-201ENST00000516455 62 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 RNU6-165P-201ENST00000517170 99 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 AC131280.1-202ENST00000624067 4211 ntBASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.21□□□□□ -2.06
CHMP3Q9Y3E7 SUMO2P12-201ENST00000405924 140 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 RNU7-85P-201ENST00000458851 63 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 snoU13.21-201ENST00000459368 105 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 SNORA25.16-201ENST00000516741 121 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 MIR4419B-201ENST00000577260 68 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.2□□□□□ -2.06
CHMP3Q9Y3E7 MT-TF-201ENST00000387314 71 ntBASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 RNA5SP489-201ENST00000410986 109 ntBASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 SNORD4B-201ENST00000459083 72 ntBASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 RNU6-531P-201ENST00000516694 104 ntBASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 MIR4491-201ENST00000581087 68 ntBASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP3Q9Y3E7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 AL161722.3-201ENST00000605789 2983 ntBASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 RNU4-32P-201ENST00000363404 141 ntBASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 RNU6-571P-201ENST00000384128 107 ntBASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 AC079140.2-201ENST00000506193 142 ntBASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 uc_338.20-201ENST00000621563 178 ntBASIC2.18□□□□□ -2.06
CHMP3Q9Y3E7 MIR377-201ENST00000362145 69 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 Y_RNA.588-201ENST00000391254 102 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 AC093729.1-201ENST00000513074 128 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 RNA5SP458-201ENST00000516188 119 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 MIR3937-201ENST00000580135 106 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 AC008163.1-202ENST00000636004 2889 ntBASIC2.17□□□□□ -2.06
CHMP3Q9Y3E7 Y_RNA.94-201ENST00000363068 106 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 MIR516A2-201ENST00000384888 90 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 MIR516A1-201ENST00000385033 90 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 MIR30A-201ENST00000385092 71 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 snoU13.11-201ENST00000459219 104 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 RNU11-2P-201ENST00000516898 142 ntBASIC2.16□□□□□ -2.06
CHMP3Q9Y3E7 SNORD93-201ENST00000408813 74 ntBASIC2.15□□□□□ -2.07
CHMP3Q9Y3E7 MIR3664-201ENST00000579074 99 ntBASIC2.15□□□□□ -2.07
CHMP3Q9Y3E7 MIR502-201ENST00000606349 86 ntBASIC2.15□□□□□ -2.07
CHMP3Q9Y3E7 RNU1-36P-201ENST00000365130 165 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 RNU6-580P-201ENST00000365159 107 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 RNU6-24P-201ENST00000384440 107 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 SNORA72.6-201ENST00000384520 129 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 SNORA17.3-201ENST00000391159 129 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 AC015818.7-201ENST00000428754 109 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 AC140658.3-201ENST00000567603 271 ntBASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.14□□□□□ -2.07
CHMP3Q9Y3E7 RNU6-403P-201ENST00000363163 104 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 200.6 ms