Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 SNORA63.4-201ENST00000362763 126 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU4-67P-201ENST00000364569 141 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD115-35-201ENST00000365122 82 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 MIR1257-201ENST00000408490 117 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-447P-201ENST00000410293 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1118P-201ENST00000410382 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1076P-201ENST00000410397 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-355P-201ENST00000410427 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-791P-201ENST00000410467 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-705P-201ENST00000410601 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1100P-201ENST00000410691 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-860P-201ENST00000410860 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1217P-201ENST00000411276 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-785P-201ENST00000411324 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD83.1-201ENST00000411362 77 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 U7.7-201ENST00000459276 60 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 MIR4771-2-201ENST00000577758 74 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 MIR4771-1-201ENST00000582617 74 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 MIR4295-201ENST00000585286 85 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 AC103810.9-201ENST00000606688 112 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 uc_338.6-201ENST00000613544 171 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 U6.90-201ENST00000614007 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 RMST_2.1-201ENST00000617263 136 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 U6.70-201ENST00000620287 104 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 MIR1255B1-201ENST00000636325 63 ntBASIC1.2□□□□□ -2.22
LIMCH1Q9UPQ0 Y_RNA.155-201ENST00000363632 101 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-409P-201ENST00000384114 104 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-106P-201ENST00000384405 107 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 MIR942-201ENST00000401111 86 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 MIR1827-201ENST00000408549 66 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 RNU7-185P-201ENST00000459215 60 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 snoU13.21-201ENST00000459368 105 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 AC023934.1-201ENST00000574529 2389 ntBASIC1.19□□□□□ -2.22
LIMCH1Q9UPQ0 MIR100-201ENST00000385259 80 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD93-201ENST00000408813 74 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-733P-201ENST00000410759 104 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 RNU7-2P-201ENST00000516096 62 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD67.1-201ENST00000516618 108 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-521P-201ENST00000516663 105 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 RNU7-137P-201ENST00000516788 62 ntBASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.18□□□□□ -2.22
LIMCH1Q9UPQ0 Y_RNA.163-201ENST00000363702 113 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 RNU4-38P-201ENST00000364472 129 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-53P-201ENST00000365367 106 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1113P-201ENST00000384348 107 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 U8.15-201ENST00000390947 134 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 SNORA7.5-201ENST00000410672 110 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 AC087343.1-201ENST00000477341 475 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-1018P-201ENST00000516577 106 ntBASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD114-26-201ENST00000363543 72 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-153P-201ENST00000364422 104 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 RNU1-36P-201ENST00000365130 165 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 MIR206-201ENST00000384872 86 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 MIR125B2-201ENST00000385128 89 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 AL031737.1-201ENST00000450125 223 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 SNORD124-201ENST00000459577 104 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 RNU6-977P-201ENST00000516411 103 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 RNA5SP102-201ENST00000516865 106 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 AC133485.1-201ENST00000567176 124 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 AC025627.3-201ENST00000582078 182 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 MIR4676-201ENST00000583078 72 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
LIMCH1Q9UPQ0 Y_RNA.78-201ENST00000362970 110 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.98-201ENST00000363109 102 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-679P-201ENST00000391003 106 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 MIR938-201ENST00000401216 83 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-554P-201ENST00000410466 106 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 uc_338.28-201ENST00000612082 187 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 AL512310.12-203ENST00000640543 90 ntBASIC1.15□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-147P-201ENST00000383983 107 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 SNORA51.5-201ENST00000384126 131 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 MIR605-201ENST00000385078 83 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 AC105081.1-201ENST00000617727 106 ntBASIC1.14□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-369P-201ENST00000362515 102 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1099P-201ENST00000363533 107 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.328-201ENST00000365208 113 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.360-201ENST00000365512 102 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-756P-201ENST00000383997 107 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 SNORD89-201ENST00000390981 114 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 MIR4694-201ENST00000578534 80 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 MIR4804-201ENST00000581683 73 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 MIR4661-201ENST00000582720 75 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 AC020891.4-201ENST00000605745 93 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 MIR6779-201ENST00000617283 64 ntBASIC1.13□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-766P-201ENST00000362478 107 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNY3P2-201ENST00000362918 102 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU4-36P-201ENST00000364294 144 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNY1P2-201ENST00000364820 117 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-364P-201ENST00000384387 107 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 MIR577-201ENST00000385196 96 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1321P-201ENST00000390905 107 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 293.1 ms