Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2□□□□□ -2.09
AP4E1Q9UPM8 ZNF355P-201ENST00000427301 3216 ntBASIC2□□□□□ -2.09
AP4E1Q9UPM8 RNU6-654P-201ENST00000364373 107 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 BX276092.1-201ENST00000427368 251 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 RNU7-85P-201ENST00000458851 63 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 RNU6-237P-201ENST00000515985 71 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 AC103810.8-201ENST00000607347 118 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 AL627230.6-201ENST00000611129 280 ntBASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
AP4E1Q9UPM8 AC005908.1-201ENST00000468701 347 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 AL133373.1-201ENST00000497098 94 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 RNU6-947P-201ENST00000516264 106 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 RNU11-2P-201ENST00000516898 142 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 MIR4524B-201ENST00000581569 115 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 AL096840.1-201ENST00000603287 93 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 AL512598.1-201ENST00000610158 273 ntBASIC1.98□□□□□ -2.09
AP4E1Q9UPM8 MIR103A2-201ENST00000362154 78 ntBASIC1.97□□□□□ -2.09
AP4E1Q9UPM8 RNA5SP264-201ENST00000363115 107 ntBASIC1.97□□□□□ -2.09
AP4E1Q9UPM8 Y_RNA.648-201ENST00000459455 110 ntBASIC1.97□□□□□ -2.09
AP4E1Q9UPM8 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.97□□□□□ -2.09
AP4E1Q9UPM8 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 RNU6-580P-201ENST00000365159 107 ntBASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 RNA5SP95-201ENST00000410319 137 ntBASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 RNU7-153P-201ENST00000516455 62 ntBASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 uc_338.20-201ENST00000621563 178 ntBASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 MIR8063-201ENST00000621930 81 ntBASIC1.96□□□□□ -2.1
AP4E1Q9UPM8 SNORD115-37-201ENST00000363768 82 ntBASIC1.95□□□□□ -2.1
AP4E1Q9UPM8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.95□□□□□ -2.1
AP4E1Q9UPM8 Y_RNA.588-201ENST00000391254 102 ntBASIC1.95□□□□□ -2.1
AP4E1Q9UPM8 snoU13.15-201ENST00000459407 104 ntBASIC1.95□□□□□ -2.1
AP4E1Q9UPM8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 RNU4-32P-201ENST00000363404 141 ntBASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 MIR1236-201ENST00000408340 102 ntBASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 HMGN2P23-201ENST00000456759 269 ntBASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
AP4E1Q9UPM8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 SNORD114-1-201ENST00000362705 72 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 RNU6-776P-201ENST00000364403 104 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 RNU6-1022P-201ENST00000365049 104 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 AC003989.2-201ENST00000440224 169 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 RNU6-165P-201ENST00000517170 99 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 AC019176.1-201ENST00000518519 225 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 MIR4491-201ENST00000581087 68 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.93□□□□□ -2.1
AP4E1Q9UPM8 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 SNORA25.13-201ENST00000516395 103 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 RNU6-531P-201ENST00000516694 104 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 SNORA25.16-201ENST00000516741 121 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 MIR4662A-201ENST00000637499 67 ntBASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.92□□□□□ -2.1
AP4E1Q9UPM8 SNORD36A-201ENST00000362874 73 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 SNORA16.1-201ENST00000364597 132 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 SNORD1A-201ENST00000364968 72 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 SNORA72.6-201ENST00000384520 129 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 MIR516A2-201ENST00000384888 90 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 MIR516A1-201ENST00000385033 90 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 U8.13-201ENST00000390842 128 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 snoU13.11-201ENST00000459219 104 ntBASIC1.91□□□□□ -2.1
AP4E1Q9UPM8 RNU6-315P-201ENST00000362666 107 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 RNU1-36P-201ENST00000365130 165 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 RNA5SP489-201ENST00000410986 109 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 MIR18B-201ENST00000454574 71 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 snoU13.9-201ENST00000458927 103 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 MIR4769-201ENST00000584126 77 ntBASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.9□□□□□ -2.11
AP4E1Q9UPM8 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 RNU6-478P-201ENST00000363904 110 ntBASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 MIR30A-201ENST00000385092 71 ntBASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 RNU6-1254P-201ENST00000391266 104 ntBASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 RPL23AP42-201ENST00000471152 471 ntBASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 RNU6-75P-201ENST00000515944 104 ntBASIC1.89□□□□□ -2.11
AP4E1Q9UPM8 RNU4-58P-201ENST00000363192 141 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 RNU6-624P-201ENST00000363411 107 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 RNU6-53P-201ENST00000365367 106 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 MIR9-3-201ENST00000385084 90 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 snoU13.23-201ENST00000458863 104 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 AC023790.1-201ENST00000482174 347 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 AC079140.2-201ENST00000506193 142 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 RNA5SP182-201ENST00000516064 82 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 MIR3664-201ENST00000579074 99 ntBASIC1.88□□□□□ -2.11
AP4E1Q9UPM8 RNU6-1229P-201ENST00000364295 107 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 Y_RNA.283-201ENST00000364798 112 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 Y_RNA.508-201ENST00000384502 114 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 RNU6-129P-201ENST00000391022 107 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 SNORD93-201ENST00000408813 74 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 HMGN2P19-201ENST00000425149 265 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 snoU13.21-201ENST00000459368 105 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 RNU6-65P-201ENST00000516332 98 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 MIR4796-201ENST00000580742 81 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 AC012493.3-201ENST00000604494 112 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.87□□□□□ -2.11
AP4E1Q9UPM8 MIR583-201ENST00000384846 75 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms