Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORD37.2-201ENST00000391075 66 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 Y_RNA.644-201ENST00000459006 113 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 Y_RNA.674-201ENST00000516362 113 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 AC022559.1-201ENST00000520905 205 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 TUG1_4.1-201ENST00000619464 181 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
VPS28Q9UK41 SNORA9.1-201ENST00000362412 131 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 Y_RNA.56-201ENST00000362798 112 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 Y_RNA.119-201ENST00000363301 96 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 RNU4-84P-201ENST00000364200 139 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 RNU2-60P-201ENST00000517290 128 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 AL359881.1-201ENST00000602916 267 ntBASIC0.12□□□□□ -2.39
VPS28Q9UK41 SNORA63.5-201ENST00000363548 123 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNA5SP245-201ENST00000364239 121 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 Y_RNA.258-201ENST00000364613 105 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 Y_RNA.297-201ENST00000364950 91 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNU6-1318P-201ENST00000365389 103 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNU6-848P-201ENST00000515948 107 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNU6-617P-201ENST00000516147 107 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNU6-473P-201ENST00000516164 107 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNU6-1049P-201ENST00000516414 107 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNA5SP330-201ENST00000517096 96 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 DNAJC19P2-201ENST00000593340 302 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 MIR6755-201ENST00000619993 66 ntBASIC0.11□□□□□ -2.39
VPS28Q9UK41 RNY1P2-201ENST00000364820 117 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 Y_RNA.423-201ENST00000384057 113 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 Y_RNA.584-201ENST00000391090 114 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 RNU4-69P-201ENST00000410677 143 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 RNU7-123P-201ENST00000515911 60 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 RNU7-121P-201ENST00000516604 62 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 AC105081.1-201ENST00000617727 106 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 AC099654.10-201ENST00000640395 161 ntBASIC0.1□□□□□ -2.39
VPS28Q9UK41 SNORA42.1-201ENST00000363515 137 ntBASIC0.09□□□□□ -2.4
VPS28Q9UK41 RNU6-716P-201ENST00000365621 103 ntBASIC0.09□□□□□ -2.4
VPS28Q9UK41 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.09□□□□□ -2.4
VPS28Q9UK41 AP002392.1-201ENST00000537692 208 ntBASIC0.09□□□□□ -2.4
VPS28Q9UK41 MIR548H5-201ENST00000580314 60 ntBASIC0.09□□□□□ -2.4
VPS28Q9UK41 AC141273.2-201ENST00000618989 130 ntBASIC0.09□□□□□ -2.4
VPS28Q9UK41 SNORD115-24-201ENST00000363528 82 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 Y_RNA.476-201ENST00000384347 108 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 RNU6-429P-201ENST00000384582 108 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 MIR1197-201ENST00000408818 88 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 AC244505.6-201ENST00000452829 130 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 AC138869.1-201ENST00000568623 124 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 RNU7-10P-201ENST00000607194 63 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 MIR3658-201ENST00000636291 56 ntBASIC0.08□□□□□ -2.4
VPS28Q9UK41 Y_RNA.49-201ENST00000362714 112 ntBASIC0.07□□□□□ -2.4
VPS28Q9UK41 Y_RNA.298-201ENST00000364960 107 ntBASIC0.07□□□□□ -2.4
VPS28Q9UK41 RNU6-187P-201ENST00000384139 106 ntBASIC0.07□□□□□ -2.4
VPS28Q9UK41 SNORD77B-201ENST00000391112 67 ntBASIC0.07□□□□□ -2.4
VPS28Q9UK41 Y_RNA.690-201ENST00000516603 95 ntBASIC0.07□□□□□ -2.4
VPS28Q9UK41 Y_RNA.240-201ENST00000364469 95 ntBASIC0.06□□□□□ -2.4
VPS28Q9UK41 AL603914.1-201ENST00000401964 204 ntBASIC0.06□□□□□ -2.4
VPS28Q9UK41 Y_RNA.651-201ENST00000459380 103 ntBASIC0.06□□□□□ -2.4
VPS28Q9UK41 Y_RNA.188-201ENST00000363952 111 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 MIR760-201ENST00000390220 80 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 RNU6-1321P-201ENST00000390905 107 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 PCNPP3-201ENST00000393579 471 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 MIR1270-201ENST00000459320 83 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 RNU7-129P-201ENST00000516128 62 ntBASIC0.05□□□□□ -2.4
VPS28Q9UK41 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.05□□□□□ -2.4
VPS28Q9UK41 RNA5SP63-201ENST00000391225 112 ntBASIC0.04□□□□□ -2.4
VPS28Q9UK41 MIR548L-201ENST00000408303 86 ntBASIC0.04□□□□□ -2.4
VPS28Q9UK41 RNU7-48P-201ENST00000458875 63 ntBASIC0.04□□□□□ -2.4
VPS28Q9UK41 RNU6-1271P-201ENST00000517049 105 ntBASIC0.04□□□□□ -2.4
VPS28Q9UK41 Y_RNA.115-201ENST00000363272 98 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 RNA5SP214-201ENST00000363378 118 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 RNU6-309P-201ENST00000364573 106 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 Y_RNA.362-201ENST00000365518 110 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 Y_RNA.401-201ENST00000383965 117 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 Y_RNA.552-201ENST00000384665 112 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 MIR206-201ENST00000384872 86 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 AL353621.2-201ENST00000605340 133 ntBASIC0.03□□□□□ -2.4
VPS28Q9UK41 SNORA2A-201ENST00000383885 135 ntBASIC0.02□□□□□ -2.41
VPS28Q9UK41 Y_RNA.448-201ENST00000384185 108 ntBASIC0.02□□□□□ -2.41
VPS28Q9UK41 RNU6-1135P-201ENST00000411083 103 ntBASIC0.02□□□□□ -2.41
VPS28Q9UK41 Y_RNA.662-201ENST00000516028 97 ntBASIC0.02□□□□□ -2.41
VPS28Q9UK41 Y_RNA.686-201ENST00000516548 134 ntBASIC0.02□□□□□ -2.41
VPS28Q9UK41 Y_RNA.98-201ENST00000363109 102 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNU6-508P-201ENST00000363231 103 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNY1P11-201ENST00000363759 113 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 SNORD114-9-201ENST00000364370 72 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 Y_RNA.251-201ENST00000364551 99 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNU6-726P-201ENST00000364680 107 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNU6-200P-201ENST00000364743 107 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNA5SP128-201ENST00000365305 116 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNU7-120P-201ENST00000459334 63 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 AC104408.1-201ENST00000605241 170 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 AL137067.1-201ENST00000615933 120 ntBASIC0.01□□□□□ -2.41
VPS28Q9UK41 RNU6-379P-201ENST00000363813 104 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 Y_RNA.441-201ENST00000384123 112 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 MIR635-201ENST00000384830 98 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0□□□□□ -2.41
VPS28Q9UK41 Y_RNA.660-201ENST00000516002 120 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 RNY4P20-201ENST00000516678 93 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 RNU6-861P-201ENST00000516745 106 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms