Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.280-201ENST00000364765 112 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.366-201ENST00000365540 102 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 MIRLET7F2-201ENST00000385277 83 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 SNORA75.5-201ENST00000391291 81 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 AC138907.4-201ENST00000570107 226 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 AC130289.1-201ENST00000577321 73 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 MIR4768-201ENST00000585270 74 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 AC021443.1-201ENST00000604478 211 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 TUG1_4.1-201ENST00000619464 181 ntBASIC0.1□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.119-201ENST00000363301 96 ntBASIC0.09□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.233-201ENST00000364407 101 ntBASIC0.09□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.452-201ENST00000384202 108 ntBASIC0.09□□□□□ -2.4
LHX3Q9UBR4 AC009779.6-201ENST00000603972 165 ntBASIC0.09□□□□□ -2.4
LHX3Q9UBR4 AC011603.4-201ENST00000611325 277 ntBASIC0.09□□□□□ -2.4
LHX3Q9UBR4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.08□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.49-201ENST00000362714 112 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 RNU6-508P-201ENST00000363231 103 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.357-201ENST00000365487 109 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 MTATP6P21-201ENST00000440681 189 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 RNU7-129P-201ENST00000516128 62 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 RNU2-60P-201ENST00000517290 128 ntBASIC0.08□□□□□ -2.4
LHX3Q9UBR4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.08□□□□□ -2.4
LHX3Q9UBR4 SNORA9.1-201ENST00000362412 131 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 SNORD114-10-201ENST00000363409 72 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.274-201ENST00000364714 101 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 PCNPP3-201ENST00000393579 471 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 RNU7-164P-201ENST00000459221 62 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 MIR4752-201ENST00000579672 72 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 MIR3658-201ENST00000636291 56 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 MIR371B-201ENST00000638082 66 ntBASIC0.07□□□□□ -2.4
LHX3Q9UBR4 RNY1P11-201ENST00000363759 113 ntBASIC0.06□□□□□ -2.4
LHX3Q9UBR4 SNORD37.2-201ENST00000391075 66 ntBASIC0.06□□□□□ -2.4
LHX3Q9UBR4 MIR1270-201ENST00000459320 83 ntBASIC0.06□□□□□ -2.4
LHX3Q9UBR4 SNORD115-24-201ENST00000363528 82 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 RNY1P2-201ENST00000364820 117 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 SNORD18B-201ENST00000365659 72 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 RNU6-1126P-201ENST00000384002 107 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 MIR760-201ENST00000390220 80 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 RNU6-239P-201ENST00000390990 99 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 RNU7-123P-201ENST00000515911 60 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 MIR3646-201ENST00000578301 84 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 AC098479.1-201ENST00000609225 154 ntBASIC0.05□□□□□ -2.4
LHX3Q9UBR4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.04□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.56-201ENST00000362798 112 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNA5SP214-201ENST00000363378 118 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-309P-201ENST00000364573 106 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.297-201ENST00000364950 91 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-463P-201ENST00000384340 107 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU4-69P-201ENST00000410677 143 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-848P-201ENST00000515948 107 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-617P-201ENST00000516147 107 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-473P-201ENST00000516164 107 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 AC099654.10-201ENST00000640395 161 ntBASIC0.04□□□□□ -2.4
LHX3Q9UBR4 SNORA42.1-201ENST00000363515 137 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.489-201ENST00000384410 101 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 RNU6-1321P-201ENST00000390905 107 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.584-201ENST00000391090 114 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 MIR548L-201ENST00000408303 86 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.644-201ENST00000459006 113 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.651-201ENST00000459380 103 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 RNU5E-3P-201ENST00000515913 68 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.674-201ENST00000516362 113 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 RNA5SP285-201ENST00000516619 119 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.03□□□□□ -2.4
LHX3Q9UBR4 AC104408.1-201ENST00000605241 170 ntBASIC0.03□□□□□ -2.4
LHX3Q9UBR4 Y_RNA.144-201ENST00000363521 113 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 RNU4-84P-201ENST00000364200 139 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 Y_RNA.298-201ENST00000364960 107 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 MIR643-201ENST00000385267 97 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 AC108059.2-201ENST00000434626 151 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 Y_RNA.686-201ENST00000516548 134 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 Y_RNA.690-201ENST00000516603 95 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 AP002392.1-201ENST00000537692 208 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 MIR4500-201ENST00000579472 76 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 AC072026.1-201ENST00000605023 201 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 MIR2909-201ENST00000617113 69 ntBASIC0.02□□□□□ -2.41
LHX3Q9UBR4 Y_RNA.299-201ENST00000364973 94 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 SNORA2A-201ENST00000383885 135 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 Y_RNA.448-201ENST00000384185 108 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 RNU6-429P-201ENST00000384582 108 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 RNU6-127P-201ENST00000390897 107 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 AC244505.6-201ENST00000452829 130 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 AC138869.1-201ENST00000568623 124 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 MIR548H5-201ENST00000580314 60 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 MIR4719-201ENST00000585233 84 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 DNAJC19P2-201ENST00000593340 302 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 MIR499B-201ENST00000636498 73 ntBASIC0.01□□□□□ -2.41
LHX3Q9UBR4 RNU6-726P-201ENST00000364680 107 ntBASIC0□□□□□ -2.41
LHX3Q9UBR4 MIR206-201ENST00000384872 86 ntBASIC0□□□□□ -2.41
LHX3Q9UBR4 MIR329-2-201ENST00000385029 84 ntBASIC0□□□□□ -2.41
LHX3Q9UBR4 RNU7-104P-201ENST00000459398 79 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 201.4 ms