Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 Y_RNA.174-201ENST00000363781 105 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 RNA5SP245-201ENST00000364239 121 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 Y_RNA.258-201ENST00000364613 105 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 RNU6-1318P-201ENST00000365389 103 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 Y_RNA.441-201ENST00000384123 112 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 Y_RNA.476-201ENST00000384347 108 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 Y_RNA.584-201ENST00000391090 114 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 SNRPGP12-201ENST00000449481 213 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 RNU7-164P-201ENST00000459221 62 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 AC074198.2-201ENST00000508153 258 ntBASIC0.29□□□□□ -2.36
RPF1Q9H9Y2 RNA5SP457-201ENST00000363657 124 ntBASIC0.28□□□□□ -2.36
RPF1Q9H9Y2 RNA5SP268-201ENST00000516828 124 ntBASIC0.28□□□□□ -2.36
RPF1Q9H9Y2 DEFB131E-201ENST00000532329 154 ntBASIC0.28□□□□□ -2.36
RPF1Q9H9Y2 AC105081.1-201ENST00000617727 106 ntBASIC0.28□□□□□ -2.36
RPF1Q9H9Y2 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.28□□□□□ -2.36
RPF1Q9H9Y2 SNORA63.5-201ENST00000363548 123 ntBASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 SUMO1P3-201ENST00000439961 304 ntBASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.662-201ENST00000516028 97 ntBASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.690-201ENST00000516603 95 ntBASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 MIR7107-201ENST00000611489 80 ntBASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.27□□□□□ -2.37
RPF1Q9H9Y2 RNU4-58P-201ENST00000363192 141 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.272-201ENST00000364696 102 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.298-201ENST00000364960 107 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 SNORD28-201ENST00000384706 75 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 AL603914.1-201ENST00000401964 204 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 MIR1197-201ENST00000408818 88 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1135P-201ENST00000411083 103 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1194P-201ENST00000516208 104 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 RNA5SP47-201ENST00000517230 109 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 AC108081.1-201ENST00000604358 221 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 MIR6828-201ENST00000636181 60 ntBASIC0.26□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.29-201ENST00000362570 113 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.119-201ENST00000363301 96 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 SNORD114-10-201ENST00000363409 72 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 SNORD18B-201ENST00000365659 72 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 SCARNA16.5-201ENST00000517114 183 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 SNORA81.3-201ENST00000517283 198 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 AC112693.2-201ENST00000556538 232 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 AC004792.1-201ENST00000614523 137 ntBASIC0.25□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.257-201ENST00000364596 102 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 RNU4-11P-201ENST00000365287 132 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 snosnR66.1-201ENST00000391095 99 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 RNU4-69P-201ENST00000410677 143 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 AC069271.1-201ENST00000445577 156 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 RNU7-197P-201ENST00000458836 62 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 RNU6-863P-201ENST00000515989 104 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 AC023932.2-201ENST00000603176 175 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.24□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.85-201ENST00000363014 111 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNA5SP62-201ENST00000363457 110 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNY1P2-201ENST00000364820 117 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1104P-201ENST00000384723 104 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1321P-201ENST00000390905 107 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNU6-135P-201ENST00000516769 101 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 MIR4639-201ENST00000584938 69 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 AL109933.3-201ENST00000619095 188 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 AC244669.1-204ENST00000621564 178 ntBASIC0.23□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1229P-201ENST00000364295 107 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1130P-201ENST00000365434 107 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU6-815P-201ENST00000384080 113 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.785-201ENST00000384290 109 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU6-1307P-201ENST00000391012 103 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU2-59P-201ENST00000410482 191 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU5E-3P-201ENST00000515913 68 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNA5SP227-201ENST00000516184 113 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNY4P20-201ENST00000516678 93 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 Y_RNA.700-201ENST00000516806 100 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 AC098479.1-201ENST00000609225 154 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 MIR6755-201ENST00000619993 66 ntBASIC0.22□□□□□ -2.37
RPF1Q9H9Y2 RNU6-151P-201ENST00000364158 107 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 RNU4-67P-201ENST00000364569 141 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 RNU6-187P-201ENST00000384139 106 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 MIR206-201ENST00000384872 86 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 MIRLET7F2-201ENST00000385277 83 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 RNU6-460P-201ENST00000391158 108 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 AL137067.1-201ENST00000615933 120 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 TUG1_4.1-201ENST00000619464 181 ntBASIC0.21□□□□□ -2.38
RPF1Q9H9Y2 MIR101-2-201ENST00000362195 79 ntBASIC0.2□□□□□ -2.38
RPF1Q9H9Y2 AC073261.1-201ENST00000429409 121 ntBASIC0.2□□□□□ -2.38
RPF1Q9H9Y2 Y_RNA.778-201ENST00000620203 90 ntBASIC0.2□□□□□ -2.38
RPF1Q9H9Y2 AC091304.10-201ENST00000641554 121 ntBASIC0.2□□□□□ -2.38
RPF1Q9H9Y2 Y_RNA.56-201ENST00000362798 112 ntBASIC0.19□□□□□ -2.38
RPF1Q9H9Y2 Y_RNA.299-201ENST00000364973 94 ntBASIC0.19□□□□□ -2.38
RPF1Q9H9Y2 RNA5SP63-201ENST00000391225 112 ntBASIC0.19□□□□□ -2.38
RPF1Q9H9Y2 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
RPF1Q9H9Y2 Y_RNA.448-201ENST00000384185 108 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 RNU6-394P-201ENST00000410735 107 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 AC108059.2-201ENST00000434626 151 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 AC069113.3-201ENST00000521019 150 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 IGKV1-22-201ENST00000524313 326 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 MIR3121-201ENST00000579680 77 ntBASIC0.18□□□□□ -2.38
RPF1Q9H9Y2 Y_RNA.49-201ENST00000362714 112 ntBASIC0.17□□□□□ -2.38
RPF1Q9H9Y2 RNU6-915P-201ENST00000364943 103 ntBASIC0.17□□□□□ -2.38
RPF1Q9H9Y2 RNU6-449P-201ENST00000383914 107 ntBASIC0.17□□□□□ -2.38
RPF1Q9H9Y2 SNORD116-18-201ENST00000383961 92 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 266.7 ms