Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-1130P-201ENST00000365434 107 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.536-201ENST00000384621 113 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 AC108059.2-201ENST00000434626 151 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 RNA5SP94-201ENST00000516917 108 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 MIR8087-201ENST00000612745 78 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 AC092634.7-201ENST00000621022 103 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 MIR330-201ENST00000362196 94 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 RNA5SP457-201ENST00000363657 124 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.366-201ENST00000365540 102 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 SNORD116-18-201ENST00000383961 92 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 RNU6-1212P-201ENST00000517023 104 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.42□□□□□ -2.34
CCDC3Q9BQI4 AC090625.1-201ENST00000357130 210 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 RNU6-508P-201ENST00000363231 103 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 SNORA32-201ENST00000384072 121 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 SNORA40.8-201ENST00000411034 126 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 MIR1270-201ENST00000459320 83 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 RNU6-863P-201ENST00000515989 104 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 RNU6-469P-201ENST00000516253 101 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 SNORD67.1-201ENST00000516618 108 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 SNORA25.16-201ENST00000516741 121 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 MIR3671-201ENST00000580455 88 ntBASIC0.41□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.280-201ENST00000364765 112 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 RNU6-915P-201ENST00000364943 103 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 RNU6-804P-201ENST00000384286 107 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 RNU6-291P-201ENST00000384720 107 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.617-201ENST00000410920 90 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 AP001328.1-201ENST00000528550 176 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 AC138749.4-201ENST00000563970 127 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 AL359881.1-201ENST00000602916 267 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 AC108081.1-201ENST00000604358 221 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 MIR6828-201ENST00000636181 60 ntBASIC0.4□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.150-201ENST00000363562 102 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 SNORD118-201ENST00000363593 134 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.215-201ENST00000364204 112 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 RNU6-647P-201ENST00000364243 107 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 RNA5SP517-201ENST00000364724 117 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 RNU6-716P-201ENST00000365621 103 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.398-201ENST00000383952 99 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 SNORA72.6-201ENST00000384520 129 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 RNU6-429P-201ENST00000384582 108 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 MIR518A1-201ENST00000385068 85 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 SNORD77B-201ENST00000391112 67 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 SNORA31.14-201ENST00000516728 116 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.697-201ENST00000516776 113 ntBASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.39□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.56-201ENST00000362798 112 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNA5SP133-201ENST00000363368 119 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNU6-535P-201ENST00000384722 107 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 MIRLET7F2-201ENST00000385277 83 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNU6-679P-201ENST00000391003 106 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNU6-460P-201ENST00000391158 108 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNA5SP136-201ENST00000410906 107 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 RNY4P20-201ENST00000516678 93 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 MIR4639-201ENST00000584938 69 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 AC090425.1-201ENST00000610007 140 ntBASIC0.38□□□□□ -2.35
CCDC3Q9BQI4 MIRLET7D-201ENST00000362263 87 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 SNORA8.2-201ENST00000384372 139 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 MIR569-201ENST00000385228 96 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 SNORD71-201ENST00000411292 86 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 RNU6-531P-201ENST00000516694 104 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 U7.2-201ENST00000607576 63 ntBASIC0.37□□□□□ -2.35
CCDC3Q9BQI4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.98-201ENST00000363109 102 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.114-201ENST00000363265 113 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.119-201ENST00000363301 96 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 SNORA36.1-201ENST00000363424 132 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 RNU6-1099P-201ENST00000363533 107 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 MIR1197-201ENST00000408818 88 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 SNORA68.3-201ENST00000515906 83 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 SNORA25.12-201ENST00000516202 82 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 RNA5SP47-201ENST00000517230 109 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 MTND5P34-201ENST00000568888 325 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 AL109933.3-201ENST00000619095 188 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 U6.109-201ENST00000636749 87 ntBASIC0.36□□□□□ -2.35
CCDC3Q9BQI4 Y_RNA.420-201ENST00000384043 110 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU6-1104P-201ENST00000384723 104 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 MIR644A-201ENST00000385262 94 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU6-848P-201ENST00000515948 107 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU6-617P-201ENST00000516147 107 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU6-473P-201ENST00000516164 107 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 DEFB131E-201ENST00000532329 154 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 RNU7-10P-201ENST00000607194 63 ntBASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
CCDC3Q9BQI4 SNORD115-19-201ENST00000363098 82 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 SNORD44.1-201ENST00000363202 61 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 SNORD115-18-201ENST00000363293 82 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 Y_RNA.198-201ENST00000364013 98 ntBASIC0.34□□□□□ -2.36
CCDC3Q9BQI4 SNORD115-17-201ENST00000364612 82 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 228.2 ms