Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-791P-201ENST00000410467 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-705P-201ENST00000410601 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-1100P-201ENST00000410691 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-860P-201ENST00000410860 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNA5SP136-201ENST00000410906 107 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-1217P-201ENST00000411276 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-785P-201ENST00000411324 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 COX6CP6-201ENST00000490840 228 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-531P-201ENST00000516694 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 MTND5P34-201ENST00000568888 325 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 MIR3612-201ENST00000579753 87 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 AC090897.1-201ENST00000580909 226 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 U6.90-201ENST00000614007 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 U6.70-201ENST00000620287 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
USP28Q96RU2 AL157777.2-201ENST00000258070 137 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 SNORD114-10-201ENST00000363409 72 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 RNA5SP499-201ENST00000363982 119 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 Y_RNA.448-201ENST00000384185 108 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
USP28Q96RU2 RNA5SP222-201ENST00000411039 105 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 RPS29P1-201ENST00000465274 159 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 RNA5SP220-201ENST00000516298 104 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 RNU6-659P-201ENST00000516454 104 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 MIR4714-201ENST00000580728 77 ntBASIC0.62□□□□□ -2.31
USP28Q96RU2 Y_RNA.116-201ENST00000363292 103 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 RNU6-42P-201ENST00000384165 107 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 RNU6-80P-201ENST00000384195 107 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 MIR518E-201ENST00000385252 88 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 SNORD77B-201ENST00000391112 67 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 AL603908.1-201ENST00000406098 201 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 AL157398.1-201ENST00000452981 186 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 MIR3163-201ENST00000581592 73 ntBASIC0.61□□□□□ -2.31
USP28Q96RU2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.61□□□□□ -2.31
USP28Q96RU2 SNORD115-19-201ENST00000363098 82 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 SNORD115-18-201ENST00000363293 82 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 Y_RNA.118-201ENST00000363300 101 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 Y_RNA.213-201ENST00000364178 111 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 SNORD115-17-201ENST00000364612 82 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 Y_RNA.261-201ENST00000364631 102 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 Y_RNA.344-201ENST00000365381 112 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 AC002350.1-201ENST00000490759 375 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 RNU7-2P-201ENST00000516096 62 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 SNORD33.1-201ENST00000516213 88 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 RNU6-448P-201ENST00000517052 107 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 MIR3910-1-201ENST00000580936 111 ntBASIC0.6□□□□□ -2.31
USP28Q96RU2 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.6□□□□□ -2.31
USP28Q96RU2 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
USP28Q96RU2 MIR18A-201ENST00000362310 71 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 Y_RNA.119-201ENST00000363301 96 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 RNY1P2-201ENST00000364820 117 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 SNORD116-14-201ENST00000383894 92 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 SNORD116-17-201ENST00000383929 92 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 SNORD116-15-201ENST00000384445 92 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 RNU6-959P-201ENST00000384671 107 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 SNORD116-19-201ENST00000384729 92 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 MIR548D2-201ENST00000384955 97 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 SNORD100-201ENST00000408573 76 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 DEFB131E-201ENST00000532329 154 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 MIR151B-201ENST00000584249 96 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 AL035470.1-201ENST00000622571 220 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 MIR3914-2-201ENST00000637339 95 ntBASIC0.59□□□□□ -2.31
USP28Q96RU2 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
USP28Q96RU2 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
USP28Q96RU2 Y_RNA.32-201ENST00000362589 110 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 SNORD115-35-201ENST00000365122 82 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 RNU6-81P-201ENST00000365608 104 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 SNORA36.2-201ENST00000384004 127 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 Y_RNA.508-201ENST00000384502 114 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 RNU6-291P-201ENST00000384720 107 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 TMSB4XP3-201ENST00000445144 114 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 RNU7-48P-201ENST00000458875 63 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 RNU6-1333P-201ENST00000516162 93 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 Y_RNA.712-201ENST00000517011 92 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 MIR376B-201ENST00000614515 100 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 AL365222.1-201ENST00000614661 98 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
USP28Q96RU2 RNA5SP245-201ENST00000364239 121 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 MIR34C-201ENST00000384831 77 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 MIR644A-201ENST00000385262 94 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 AL353813.1-201ENST00000440700 253 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 snoU13.18-201ENST00000459483 104 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 RNU6-521P-201ENST00000516663 105 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 SNORA31.14-201ENST00000516728 116 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 Y_RNA.697-201ENST00000516776 113 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 RNU6-765P-201ENST00000516916 99 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 MIR6788-201ENST00000618842 66 ntBASIC0.57□□□□□ -2.32
USP28Q96RU2 Y_RNA.127-201ENST00000363386 109 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 SNORA63.5-201ENST00000363548 123 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 Y_RNA.328-201ENST00000365208 113 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 Y_RNA.346-201ENST00000365385 112 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 Y_RNA.549-201ENST00000384657 102 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 MIR548J-201ENST00000408833 112 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 uc_338.16-201ENST00000621804 95 ntBASIC0.56□□□□□ -2.32
USP28Q96RU2 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.55□□□□□ -2.32
USP28Q96RU2 Y_RNA.355-201ENST00000365462 98 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 Y_RNA.362-201ENST00000365518 110 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 Y_RNA.536-201ENST00000384621 113 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms