Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-977P-201ENST00000516411 103 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 SNORD67.1-201ENST00000516618 108 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.692-201ENST00000516627 105 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 AC090897.1-201ENST00000580909 226 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 MIR4491-201ENST00000581087 68 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 MIR3133-201ENST00000583157 78 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.13-201ENST00000362403 112 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 SNORD18B-201ENST00000365659 72 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.525-201ENST00000384570 113 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 SNORD100-201ENST00000408573 76 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 RNA5SP237-201ENST00000410414 113 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-893P-201ENST00000458841 100 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 RNU5E-3P-201ENST00000515913 68 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 SNORA25.16-201ENST00000516741 121 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 RNU7-156P-201ENST00000517214 74 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 AC087741.2-201ENST00000619415 172 ntBASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.218-201ENST00000364218 104 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 SNORA36.2-201ENST00000384004 127 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 SNORD93-201ENST00000408813 74 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 RNU4-69P-201ENST00000410677 143 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.630-201ENST00000411370 108 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-229P-201ENST00000516614 102 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.703-201ENST00000516846 111 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-1234P-201ENST00000516877 103 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 AC138749.4-201ENST00000563970 127 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 AC243829.6-201ENST00000612652 106 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 MIR6082-201ENST00000613604 109 ntBASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
ZNF540Q8NDQ6 MIR18A-201ENST00000362310 71 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-235P-201ENST00000362644 107 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 SNORD58C-201ENST00000365223 64 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 SNORD50.2-201ENST00000365465 70 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-746P-201ENST00000384112 109 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 MIR206-201ENST00000384872 86 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-1321P-201ENST00000390905 107 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 RNU4-83P-201ENST00000410863 133 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 AC002350.1-201ENST00000490759 375 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 MIR3612-201ENST00000579753 87 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 MIR924-201ENST00000638017 53 ntBASIC0.42□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.32-201ENST00000362589 110 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORD115-19-201ENST00000363098 82 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORD115-18-201ENST00000363293 82 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORD18A-201ENST00000363753 72 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-647P-201ENST00000364243 107 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORD115-17-201ENST00000364612 82 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-616P-201ENST00000384353 107 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORA40-201ENST00000388090 126 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 AL353813.1-201ENST00000440700 253 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 RNU7-107P-201ENST00000459121 61 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-971P-201ENST00000516920 106 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 MTND5P34-201ENST00000568888 325 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.773-201ENST00000607168 90 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 AC105081.1-201ENST00000617727 106 ntBASIC0.41□□□□□ -2.34
ZNF540Q8NDQ6 SNORD114-10-201ENST00000363409 72 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNU4-45P-201ENST00000365469 141 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-291P-201ENST00000384720 107 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP193-201ENST00000410353 107 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 SUMO1P3-201ENST00000439961 304 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-772P-201ENST00000516042 105 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-765P-201ENST00000516916 99 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-448P-201ENST00000517052 107 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 U6.109-201ENST00000636749 87 ntBASIC0.4□□□□□ -2.35
ZNF540Q8NDQ6 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-403P-201ENST00000363163 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP133-201ENST00000363368 119 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP499-201ENST00000363982 119 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.198-201ENST00000364013 98 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-704P-201ENST00000364162 103 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP245-201ENST00000364239 121 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNY1P2-201ENST00000364820 117 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.343-201ENST00000365354 112 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-364P-201ENST00000384387 107 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-447P-201ENST00000410293 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1118P-201ENST00000410382 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1076P-201ENST00000410397 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-355P-201ENST00000410427 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-791P-201ENST00000410467 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-705P-201ENST00000410601 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1100P-201ENST00000410691 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-860P-201ENST00000410860 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1217P-201ENST00000411276 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-785P-201ENST00000411324 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 AC098934.3-201ENST00000430450 190 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-531P-201ENST00000516694 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 AP003327.1-201ENST00000529684 127 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 U6.90-201ENST00000614007 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 TUG1_4.1-201ENST00000619464 181 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 U6.70-201ENST00000620287 104 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 MIR1255B1-201ENST00000636325 63 ntBASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.39□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.299-201ENST00000364973 94 ntBASIC0.38□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.344-201ENST00000365381 112 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms