Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MIR513C-201ENST00000401352 84 ntBASIC0.36□□□□□ -2.35
NUP54Q7Z3B4 RNA5SP193-201ENST00000410353 107 ntBASIC0.36□□□□□ -2.35
NUP54Q7Z3B4 MIR1270-201ENST00000459320 83 ntBASIC0.36□□□□□ -2.35
NUP54Q7Z3B4 AC243829.6-201ENST00000612652 106 ntBASIC0.36□□□□□ -2.35
NUP54Q7Z3B4 FTX_2.1-201ENST00000618816 94 ntBASIC0.36□□□□□ -2.35
NUP54Q7Z3B4 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
NUP54Q7Z3B4 AC108081.1-201ENST00000604358 221 ntBASIC0.35□□□□□ -2.35
NUP54Q7Z3B4 SNORA25.18-201ENST00000607153 114 ntBASIC0.35□□□□□ -2.35
NUP54Q7Z3B4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
NUP54Q7Z3B4 SNORA36.1-201ENST00000363424 132 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.270-201ENST00000364693 104 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 RNY1P2-201ENST00000364820 117 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 MIRLET7F2-201ENST00000385277 83 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 SNORD77B-201ENST00000391112 67 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 RNU5E-3P-201ENST00000515913 68 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.692-201ENST00000516627 105 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 RNY4P20-201ENST00000516678 93 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 AC022523.2-201ENST00000561045 150 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 MIR3121-201ENST00000579680 77 ntBASIC0.34□□□□□ -2.36
NUP54Q7Z3B4 MIR101-2-201ENST00000362195 79 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 SNORD44.1-201ENST00000363202 61 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.119-201ENST00000363301 96 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 RNU6-915P-201ENST00000364943 103 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 RNU6-886P-201ENST00000384319 105 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 RNU6-460P-201ENST00000391158 108 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 MIR3144-201ENST00000579460 79 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 MIR4639-201ENST00000584938 69 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 AC105081.1-201ENST00000617727 106 ntBASIC0.33□□□□□ -2.36
NUP54Q7Z3B4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 RNU6-804P-201ENST00000384286 107 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 PCNPP3-201ENST00000393579 471 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 RNU6-863P-201ENST00000515989 104 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 RNA5SP268-201ENST00000516828 124 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 RNA5SP47-201ENST00000517230 109 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 RNU6-794P-201ENST00000517261 64 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 AP001340.1-201ENST00000624405 217 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 MIR6828-201ENST00000636181 60 ntBASIC0.32□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.56-201ENST00000362798 112 ntBASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.118-201ENST00000363300 101 ntBASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 RNU6-429P-201ENST00000384582 108 ntBASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 SNORD28-201ENST00000384706 75 ntBASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 MIR548X2-201ENST00000579776 100 ntBASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.31□□□□□ -2.36
NUP54Q7Z3B4 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 RNU6-1099P-201ENST00000363533 107 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.150-201ENST00000363562 102 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.400-201ENST00000383963 111 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 MIR206-201ENST00000384872 86 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 MIR489-201ENST00000384923 84 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 AP001328.1-201ENST00000528550 176 ntBASIC0.3□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.8-201ENST00000362353 102 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.398-201ENST00000383952 99 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 RNU6-1104P-201ENST00000384723 104 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 RNU6-1321P-201ENST00000390905 107 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 SNRPGP12-201ENST00000449481 213 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 RNU7-48P-201ENST00000458875 63 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 AC090425.1-201ENST00000610007 140 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 PVT1_3.1-201ENST00000620853 95 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 AC091304.10-201ENST00000641554 121 ntBASIC0.29□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.98-201ENST00000363109 102 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 SNORD114-23-201ENST00000363536 72 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 Y_RNA.215-201ENST00000364204 112 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 RNA5SP245-201ENST00000364239 121 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 RNU6-647P-201ENST00000364243 107 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 RNU2-59P-201ENST00000410482 191 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 SUMO1P3-201ENST00000439961 304 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 MIR548H5-201ENST00000580314 60 ntBASIC0.28□□□□□ -2.36
NUP54Q7Z3B4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.114-201ENST00000363265 113 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 SNORA63.5-201ENST00000363548 123 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.420-201ENST00000384043 110 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.448-201ENST00000384185 108 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.555-201ENST00000384673 110 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 AC244505.6-201ENST00000452829 130 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 RNU7-2P-201ENST00000516096 62 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 RNA5SP227-201ENST00000516184 113 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 IGKV1-22-201ENST00000524313 326 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 AC138869.1-201ENST00000568623 124 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 RNU7-10P-201ENST00000607194 63 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 MIR7107-201ENST00000611489 80 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 AC244669.1-204ENST00000621564 178 ntBASIC0.27□□□□□ -2.37
NUP54Q7Z3B4 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.280-201ENST00000364765 112 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 RNU6-616P-201ENST00000384353 107 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 MIR569-201ENST00000385228 96 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 RN7SKP19-201ENST00000516016 252 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 U7.2-201ENST00000607576 63 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 TUG1_4.1-201ENST00000619464 181 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 AP001362.1-201ENST00000625165 124 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 AC010487.4-201ENST00000637027 61 ntBASIC0.25□□□□□ -2.37
NUP54Q7Z3B4 SNORD115-35-201ENST00000365122 82 ntBASIC0.24□□□□□ -2.37
NUP54Q7Z3B4 Y_RNA.328-201ENST00000365208 113 ntBASIC0.24□□□□□ -2.37
NUP54Q7Z3B4 RNA5SP136-201ENST00000410906 107 ntBASIC0.24□□□□□ -2.37
NUP54Q7Z3B4 MIR4500-201ENST00000579472 76 ntBASIC0.24□□□□□ -2.37
NUP54Q7Z3B4 MIR3163-201ENST00000581592 73 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 159.8 ms