Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL137067.1-201ENST00000615933 120 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 AC021753.1-201ENST00000635724 168 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 MIR1265-201ENST00000408444 86 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 AC002350.1-201ENST00000490759 375 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 RNU6-448P-201ENST00000517052 107 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 MIR4491-201ENST00000581087 68 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 MIR548AE2-201ENST00000583456 67 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 MIR5087-201ENST00000635826 76 ntBASIC0.66□□□□□ -2.3
COL28A1Q2UY09 MIR18A-201ENST00000362310 71 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 Y_RNA.170-201ENST00000363746 110 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 Y_RNA.420-201ENST00000384043 110 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 RNU6-907P-201ENST00000390924 102 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 RNU4-69P-201ENST00000410677 143 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 RNA5SP222-201ENST00000411039 105 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 RNU7-200P-201ENST00000516105 62 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 RNU6-229P-201ENST00000516614 102 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 AC108081.1-201ENST00000604358 221 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 MIR6082-201ENST00000613604 109 ntBASIC0.65□□□□□ -2.31
COL28A1Q2UY09 SNORD114-10-201ENST00000363409 72 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 RNY1P5-201ENST00000383890 115 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 MIR548I1-201ENST00000408810 149 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 RNU6-1194P-201ENST00000516208 104 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 SNORA62.5-201ENST00000516634 120 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 U7.2-201ENST00000607576 63 ntBASIC0.64□□□□□ -2.31
COL28A1Q2UY09 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
COL28A1Q2UY09 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
COL28A1Q2UY09 Y_RNA.13-201ENST00000362403 112 ntBASIC0.63□□□□□ -2.31
COL28A1Q2UY09 SNORA32-201ENST00000384072 121 ntBASIC0.63□□□□□ -2.31
COL28A1Q2UY09 Y_RNA.488-201ENST00000384403 102 ntBASIC0.63□□□□□ -2.31
COL28A1Q2UY09 RNY4P20-201ENST00000516678 93 ntBASIC0.63□□□□□ -2.31
COL28A1Q2UY09 RNU7-137P-201ENST00000516788 62 ntBASIC0.63□□□□□ -2.31
COL28A1Q2UY09 RNU6-403P-201ENST00000363163 104 ntBASIC0.62□□□□□ -2.31
COL28A1Q2UY09 RNU6-647P-201ENST00000364243 107 ntBASIC0.62□□□□□ -2.31
COL28A1Q2UY09 MIR140-201ENST00000385282 100 ntBASIC0.62□□□□□ -2.31
COL28A1Q2UY09 AC092628.1-201ENST00000436250 252 ntBASIC0.62□□□□□ -2.31
COL28A1Q2UY09 MIR4514-201ENST00000581410 57 ntBASIC0.62□□□□□ -2.31
COL28A1Q2UY09 Y_RNA.114-201ENST00000363265 113 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
COL28A1Q2UY09 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 MIR1270-201ENST00000459320 83 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 RNU5E-3P-201ENST00000515913 68 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 SNORD67.1-201ENST00000516618 108 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 AC018659.1-201ENST00000551083 169 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 MIR4636-201ENST00000582271 80 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.61□□□□□ -2.31
COL28A1Q2UY09 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
COL28A1Q2UY09 RNA5SP117-201ENST00000365294 118 ntBASIC0.6□□□□□ -2.31
COL28A1Q2UY09 SNORD77B-201ENST00000391112 67 ntBASIC0.6□□□□□ -2.31
COL28A1Q2UY09 RNA5SP63-201ENST00000391225 112 ntBASIC0.6□□□□□ -2.31
COL28A1Q2UY09 AL359881.1-201ENST00000602916 267 ntBASIC0.6□□□□□ -2.31
COL28A1Q2UY09 SNORA36.2-201ENST00000384004 127 ntBASIC0.59□□□□□ -2.31
COL28A1Q2UY09 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.59□□□□□ -2.31
COL28A1Q2UY09 RNU6-255P-201ENST00000516957 105 ntBASIC0.59□□□□□ -2.31
COL28A1Q2UY09 RNU4-58P-201ENST00000363192 141 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.174-201ENST00000363781 105 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 RNU6-209P-201ENST00000384118 107 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.506-201ENST00000384494 102 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 SNORA72.6-201ENST00000384520 129 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 RNA5SP136-201ENST00000410906 107 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.617-201ENST00000410920 90 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 AL158147.1-201ENST00000443970 75 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 RN7SKP19-201ENST00000516016 252 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 RN7SKP12-201ENST00000516275 143 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 IGKV1-22-201ENST00000524313 326 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 AC243829.6-201ENST00000612652 106 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 TUG1_4.1-201ENST00000619464 181 ntBASIC0.58□□□□□ -2.32
COL28A1Q2UY09 RNY1P2-201ENST00000364820 117 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.343-201ENST00000365354 112 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 RNU6-1104P-201ENST00000384723 104 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 RNU6-426P-201ENST00000516464 97 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 SNORA25.16-201ENST00000516741 121 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 RNU6-135P-201ENST00000516769 101 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 AC022523.2-201ENST00000561045 150 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 AC138749.4-201ENST00000563970 127 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 uc_338.16-201ENST00000621804 95 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 MIR6759-201ENST00000638110 65 ntBASIC0.57□□□□□ -2.32
COL28A1Q2UY09 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL28A1Q2UY09 RNA5SP133-201ENST00000363368 119 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 RNU6-945P-201ENST00000383947 107 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 RNY1P8-201ENST00000383970 114 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.536-201ENST00000384621 113 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.568-201ENST00000384742 113 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 RNU6-733P-201ENST00000410759 104 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
COL28A1Q2UY09 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 MT-TR-201ENST00000387439 65 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.697-201ENST00000516776 113 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 MIR3678-201ENST00000578455 94 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 MIR3163-201ENST00000581592 73 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 U6.109-201ENST00000636749 87 ntBASIC0.55□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.198-201ENST00000364013 98 ntBASIC0.54□□□□□ -2.32
COL28A1Q2UY09 RNU6-291P-201ENST00000384720 107 ntBASIC0.54□□□□□ -2.32
COL28A1Q2UY09 MTND4LP9-201ENST00000427694 174 ntBASIC0.54□□□□□ -2.32
COL28A1Q2UY09 RNU6-469P-201ENST00000516253 101 ntBASIC0.54□□□□□ -2.32
COL28A1Q2UY09 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.32-201ENST00000362589 110 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 SNORD115-19-201ENST00000363098 82 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 SNORD115-18-201ENST00000363293 82 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.213-201ENST00000364178 111 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms