Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC025521.1-201ENST00000621624 286 ntBASIC1.71□□□□□ -2.14
RNF4P78317 Y_RNA.73-201ENST00000362910 113 ntBASIC1.7□□□□□ -2.14
RNF4P78317 RNU6-403P-201ENST00000363163 104 ntBASIC1.7□□□□□ -2.14
RNF4P78317 AC023827.1-201ENST00000569247 97 ntBASIC1.7□□□□□ -2.14
RNF4P78317 MIR4491-201ENST00000581087 68 ntBASIC1.7□□□□□ -2.14
RNF4P78317 MIR7843-201ENST00000622274 79 ntBASIC1.7□□□□□ -2.14
RNF4P78317 RNU1-36P-201ENST00000365130 165 ntBASIC1.69□□□□□ -2.14
RNF4P78317 SNORD116-22-201ENST00000384430 92 ntBASIC1.69□□□□□ -2.14
RNF4P78317 SNORA26.9-201ENST00000391322 122 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNU4-83P-201ENST00000410863 133 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNU6-592P-201ENST00000411333 103 ntBASIC1.69□□□□□ -2.14
RNF4P78317 SNRPGP12-201ENST00000449481 213 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNU6-531P-201ENST00000516694 104 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNU6-267P-201ENST00000516714 103 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNU6-902P-201ENST00000517212 91 ntBASIC1.69□□□□□ -2.14
RNF4P78317 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.69□□□□□ -2.14
RNF4P78317 AL513043.2-201ENST00000573941 143 ntBASIC1.69□□□□□ -2.14
RNF4P78317 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.69□□□□□ -2.14
RNF4P78317 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.69□□□□□ -2.14
RNF4P78317 RNY1P1-201ENST00000364372 112 ntBASIC1.68□□□□□ -2.14
RNF4P78317 SNORA16.1-201ENST00000364597 132 ntBASIC1.68□□□□□ -2.14
RNF4P78317 RNY1P4-201ENST00000384595 115 ntBASIC1.68□□□□□ -2.14
RNF4P78317 MIR9-3-201ENST00000385084 90 ntBASIC1.68□□□□□ -2.14
RNF4P78317 Y_RNA.588-201ENST00000391254 102 ntBASIC1.68□□□□□ -2.14
RNF4P78317 Y_RNA.609-201ENST00000410669 89 ntBASIC1.68□□□□□ -2.14
RNF4P78317 MIR18B-201ENST00000454574 71 ntBASIC1.68□□□□□ -2.14
RNF4P78317 RNU6-850P-201ENST00000516934 103 ntBASIC1.68□□□□□ -2.14
RNF4P78317 AC036111.3-201ENST00000526389 112 ntBASIC1.68□□□□□ -2.14
RNF4P78317 MIR4668-201ENST00000582284 70 ntBASIC1.68□□□□□ -2.14
RNF4P78317 IGLL4P-201ENST00000614590 133 ntBASIC1.68□□□□□ -2.14
RNF4P78317 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
RNF4P78317 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
RNF4P78317 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
RNF4P78317 RNU6-1125P-201ENST00000363601 107 ntBASIC1.67□□□□□ -2.14
RNF4P78317 SNORD113.3-201ENST00000364630 78 ntBASIC1.67□□□□□ -2.14
RNF4P78317 RNU6-820P-201ENST00000384273 107 ntBASIC1.67□□□□□ -2.14
RNF4P78317 RNU6-480P-201ENST00000384332 107 ntBASIC1.67□□□□□ -2.14
RNF4P78317 RNU6-910P-201ENST00000390844 107 ntBASIC1.67□□□□□ -2.14
RNF4P78317 MIR1257-201ENST00000408490 117 ntBASIC1.67□□□□□ -2.14
RNF4P78317 AL591806.2-201ENST00000433122 173 ntBASIC1.67□□□□□ -2.14
RNF4P78317 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.67□□□□□ -2.14
RNF4P78317 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.67□□□□□ -2.14
RNF4P78317 Y_RNA.57-201ENST00000362806 113 ntBASIC1.66□□□□□ -2.14
RNF4P78317 RNU6-53P-201ENST00000365367 106 ntBASIC1.66□□□□□ -2.14
RNF4P78317 RNU6-573P-201ENST00000383938 106 ntBASIC1.66□□□□□ -2.14
RNF4P78317 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.66□□□□□ -2.14
RNF4P78317 RNU7-185P-201ENST00000459215 60 ntBASIC1.66□□□□□ -2.14
RNF4P78317 AC022137.1-201ENST00000483735 151 ntBASIC1.66□□□□□ -2.14
RNF4P78317 MIR4771-2-201ENST00000577758 74 ntBASIC1.66□□□□□ -2.14
RNF4P78317 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
RNF4P78317 MIR4771-1-201ENST00000582617 74 ntBASIC1.66□□□□□ -2.14
RNF4P78317 AC084768.2-201ENST00000622736 221 ntBASIC1.66□□□□□ -2.14
RNF4P78317 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
RNF4P78317 RNU6-219P-201ENST00000364728 107 ntBASIC1.65□□□□□ -2.15
RNF4P78317 RNU6-934P-201ENST00000365154 107 ntBASIC1.65□□□□□ -2.15
RNF4P78317 RNU6-997P-201ENST00000384725 107 ntBASIC1.65□□□□□ -2.15
RNF4P78317 snoU13.23-201ENST00000458863 104 ntBASIC1.65□□□□□ -2.15
RNF4P78317 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.65□□□□□ -2.15
RNF4P78317 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
RNF4P78317 Y_RNA.191-201ENST00000363972 113 ntBASIC1.64□□□□□ -2.15
RNF4P78317 RNU6-571P-201ENST00000384128 107 ntBASIC1.64□□□□□ -2.15
RNF4P78317 RNU6-675P-201ENST00000384236 104 ntBASIC1.64□□□□□ -2.15
RNF4P78317 MIR764-201ENST00000390811 85 ntBASIC1.64□□□□□ -2.15
RNF4P78317 Y_RNA.620-201ENST00000411009 88 ntBASIC1.64□□□□□ -2.15
RNF4P78317 AL591704.2-201ENST00000421658 181 ntBASIC1.64□□□□□ -2.15
RNF4P78317 RNU7-40P-201ENST00000516397 64 ntBASIC1.64□□□□□ -2.15
RNF4P78317 RNU6-548P-201ENST00000517083 115 ntBASIC1.64□□□□□ -2.15
RNF4P78317 MIR4419B-201ENST00000577260 68 ntBASIC1.64□□□□□ -2.15
RNF4P78317 MIR1245B-201ENST00000636115 69 ntBASIC1.64□□□□□ -2.15
RNF4P78317 AC008163.1-202ENST00000636004 2889 ntBASIC1.64□□□□□ -2.15
RNF4P78317 RNU4-58P-201ENST00000363192 141 ntBASIC1.63□□□□□ -2.15
RNF4P78317 RNU6-497P-201ENST00000365316 104 ntBASIC1.63□□□□□ -2.15
RNF4P78317 RNU7-21P-201ENST00000459430 62 ntBASIC1.63□□□□□ -2.15
RNF4P78317 AC023790.1-201ENST00000482174 347 ntBASIC1.63□□□□□ -2.15
RNF4P78317 MIR8066-201ENST00000617280 78 ntBASIC1.63□□□□□ -2.15
RNF4P78317 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.62□□□□□ -2.15
RNF4P78317 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.62□□□□□ -2.15
RNF4P78317 AC015712.3-201ENST00000559380 164 ntBASIC1.62□□□□□ -2.15
RNF4P78317 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.62□□□□□ -2.15
RNF4P78317 AC106800.4-201ENST00000614905 153 ntBASIC1.62□□□□□ -2.15
RNF4P78317 Y_RNA.13-201ENST00000362403 112 ntBASIC1.61□□□□□ -2.15
RNF4P78317 SNORA80D-201ENST00000384488 135 ntBASIC1.61□□□□□ -2.15
RNF4P78317 RNU6-1152P-201ENST00000384576 107 ntBASIC1.61□□□□□ -2.15
RNF4P78317 AC108210.2-201ENST00000503681 201 ntBASIC1.61□□□□□ -2.15
RNF4P78317 SNORA25.15-201ENST00000516487 89 ntBASIC1.61□□□□□ -2.15
RNF4P78317 MIR8081-201ENST00000611533 95 ntBASIC1.61□□□□□ -2.15
RNF4P78317 RNU6-994P-201ENST00000410507 111 ntBASIC1.6□□□□□ -2.15
RNF4P78317 SNORD79.1-201ENST00000516069 84 ntBASIC1.6□□□□□ -2.15
RNF4P78317 MIR4524B-201ENST00000581569 115 ntBASIC1.6□□□□□ -2.15
RNF4P78317 AC013244.2-201ENST00000603396 103 ntBASIC1.6□□□□□ -2.15
RNF4P78317 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
RNF4P78317 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
RNF4P78317 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
RNF4P78317 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
RNF4P78317 MIR516A2-201ENST00000384888 90 ntBASIC1.59□□□□□ -2.15
RNF4P78317 MIR516A1-201ENST00000385033 90 ntBASIC1.59□□□□□ -2.15
RNF4P78317 SNORD111-201ENST00000408139 94 ntBASIC1.59□□□□□ -2.15
RNF4P78317 MIR6082-201ENST00000613604 109 ntBASIC1.59□□□□□ -2.15
RNF4P78317 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
RNF4P78317 RNU6-519P-201ENST00000410590 108 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 255.9 ms