Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RNU6-135P-201ENST00000516769 101 ntBASIC0.32□□□□□ -2.36
PEX3P56589 Y_RNA.697-201ENST00000516776 113 ntBASIC0.32□□□□□ -2.36
PEX3P56589 IGKV1-22-201ENST00000524313 326 ntBASIC0.32□□□□□ -2.36
PEX3P56589 AC022523.2-201ENST00000561045 150 ntBASIC0.32□□□□□ -2.36
PEX3P56589 MIR3121-201ENST00000579680 77 ntBASIC0.32□□□□□ -2.36
PEX3P56589 RN7SL793P-201ENST00000583259 296 ntBASIC0.32□□□□□ -2.36
PEX3P56589 SNORA25.18-201ENST00000607153 114 ntBASIC0.32□□□□□ -2.36
PEX3P56589 U6.109-201ENST00000636749 87 ntBASIC0.32□□□□□ -2.36
PEX3P56589 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.32□□□□□ -2.36
PEX3P56589 RNU6-151P-201ENST00000364158 107 ntBASIC0.31□□□□□ -2.36
PEX3P56589 Y_RNA.299-201ENST00000364973 94 ntBASIC0.31□□□□□ -2.36
PEX3P56589 SNORD18B-201ENST00000365659 72 ntBASIC0.31□□□□□ -2.36
PEX3P56589 RNU6-449P-201ENST00000383914 107 ntBASIC0.31□□□□□ -2.36
PEX3P56589 RNU6-886P-201ENST00000384319 105 ntBASIC0.31□□□□□ -2.36
PEX3P56589 RNU6-535P-201ENST00000384722 107 ntBASIC0.31□□□□□ -2.36
PEX3P56589 RNU6-1104P-201ENST00000384723 104 ntBASIC0.31□□□□□ -2.36
PEX3P56589 AC108740.1-201ENST00000498629 225 ntBASIC0.31□□□□□ -2.36
PEX3P56589 RNA5SP47-201ENST00000517230 109 ntBASIC0.31□□□□□ -2.36
PEX3P56589 AL137067.1-201ENST00000615933 120 ntBASIC0.31□□□□□ -2.36
PEX3P56589 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
PEX3P56589 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
PEX3P56589 RNU4-58P-201ENST00000363192 141 ntBASIC0.3□□□□□ -2.36
PEX3P56589 RNA5SP245-201ENST00000364239 121 ntBASIC0.3□□□□□ -2.36
PEX3P56589 RNY1P2-201ENST00000364820 117 ntBASIC0.3□□□□□ -2.36
PEX3P56589 SNORD116-18-201ENST00000383961 92 ntBASIC0.3□□□□□ -2.36
PEX3P56589 SNORA25.12-201ENST00000516202 82 ntBASIC0.3□□□□□ -2.36
PEX3P56589 RNU6-182P-201ENST00000516970 105 ntBASIC0.3□□□□□ -2.36
PEX3P56589 SCARNA16.5-201ENST00000517114 183 ntBASIC0.3□□□□□ -2.36
PEX3P56589 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.3□□□□□ -2.36
PEX3P56589 MIR3144-201ENST00000579460 79 ntBASIC0.3□□□□□ -2.36
PEX3P56589 MIR4639-201ENST00000584938 69 ntBASIC0.3□□□□□ -2.36
PEX3P56589 AC090625.1-201ENST00000357130 210 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-915P-201ENST00000364943 103 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-804P-201ENST00000384286 107 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNY1P4-201ENST00000384595 115 ntBASIC0.29□□□□□ -2.36
PEX3P56589 SNORD28-201ENST00000384706 75 ntBASIC0.29□□□□□ -2.36
PEX3P56589 MIR206-201ENST00000384872 86 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-1321P-201ENST00000390905 107 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-1307P-201ENST00000391012 103 ntBASIC0.29□□□□□ -2.36
PEX3P56589 SNORD71-201ENST00000411292 86 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-863P-201ENST00000515989 104 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-469P-201ENST00000516253 101 ntBASIC0.29□□□□□ -2.36
PEX3P56589 MIR7107-201ENST00000611489 80 ntBASIC0.29□□□□□ -2.36
PEX3P56589 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.29□□□□□ -2.36
PEX3P56589 AP001340.1-201ENST00000624405 217 ntBASIC0.29□□□□□ -2.36
PEX3P56589 RNU6-1327P-201ENST00000365302 105 ntBASIC0.28□□□□□ -2.36
PEX3P56589 Y_RNA.398-201ENST00000383952 99 ntBASIC0.28□□□□□ -2.36
PEX3P56589 RNA5SP268-201ENST00000516828 124 ntBASIC0.28□□□□□ -2.36
PEX3P56589 RNU6-794P-201ENST00000517261 64 ntBASIC0.28□□□□□ -2.36
PEX3P56589 AC105081.1-201ENST00000617727 106 ntBASIC0.28□□□□□ -2.36
PEX3P56589 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.28□□□□□ -2.36
PEX3P56589 Y_RNA.119-201ENST00000363301 96 ntBASIC0.27□□□□□ -2.37
PEX3P56589 SNORA63.5-201ENST00000363548 123 ntBASIC0.27□□□□□ -2.37
PEX3P56589 Y_RNA.150-201ENST00000363562 102 ntBASIC0.27□□□□□ -2.37
PEX3P56589 MIR569-201ENST00000385228 96 ntBASIC0.27□□□□□ -2.37
PEX3P56589 MIRLET7F2-201ENST00000385277 83 ntBASIC0.27□□□□□ -2.37
PEX3P56589 MT-TI-201ENST00000387365 69 ntBASIC0.27□□□□□ -2.37
PEX3P56589 SNRPGP12-201ENST00000449481 213 ntBASIC0.27□□□□□ -2.37
PEX3P56589 AC244505.6-201ENST00000452829 130 ntBASIC0.27□□□□□ -2.37
PEX3P56589 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
PEX3P56589 AC010487.4-201ENST00000637027 61 ntBASIC0.27□□□□□ -2.37
PEX3P56589 Y_RNA.56-201ENST00000362798 112 ntBASIC0.26□□□□□ -2.37
PEX3P56589 Y_RNA.400-201ENST00000383963 111 ntBASIC0.26□□□□□ -2.37
PEX3P56589 Y_RNA.555-201ENST00000384673 110 ntBASIC0.26□□□□□ -2.37
PEX3P56589 MIR613-201ENST00000385248 95 ntBASIC0.26□□□□□ -2.37
PEX3P56589 MTND5P41-201ENST00000517498 206 ntBASIC0.26□□□□□ -2.37
PEX3P56589 DEFB131E-201ENST00000532329 154 ntBASIC0.26□□□□□ -2.37
PEX3P56589 MIR548X2-201ENST00000579776 100 ntBASIC0.26□□□□□ -2.37
PEX3P56589 RNU6-429P-201ENST00000384582 108 ntBASIC0.25□□□□□ -2.37
PEX3P56589 SUMO1P3-201ENST00000439961 304 ntBASIC0.25□□□□□ -2.37
PEX3P56589 AC087741.2-201ENST00000619415 172 ntBASIC0.25□□□□□ -2.37
PEX3P56589 AC244669.1-204ENST00000621564 178 ntBASIC0.25□□□□□ -2.37
PEX3P56589 SNORD115-19-201ENST00000363098 82 ntBASIC0.24□□□□□ -2.37
PEX3P56589 SNORD115-18-201ENST00000363293 82 ntBASIC0.24□□□□□ -2.37
PEX3P56589 SNORD115-17-201ENST00000364612 82 ntBASIC0.24□□□□□ -2.37
PEX3P56589 RNU6-1126P-201ENST00000384002 107 ntBASIC0.24□□□□□ -2.37
PEX3P56589 Y_RNA.420-201ENST00000384043 110 ntBASIC0.24□□□□□ -2.37
PEX3P56589 Y_RNA.448-201ENST00000384185 108 ntBASIC0.24□□□□□ -2.37
PEX3P56589 RNU7-48P-201ENST00000458875 63 ntBASIC0.24□□□□□ -2.37
PEX3P56589 RNU7-2P-201ENST00000516096 62 ntBASIC0.24□□□□□ -2.37
PEX3P56589 Y_RNA.692-201ENST00000516627 105 ntBASIC0.24□□□□□ -2.37
PEX3P56589 RNU6-1212P-201ENST00000517023 104 ntBASIC0.24□□□□□ -2.37
PEX3P56589 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
PEX3P56589 TUG1_4.1-201ENST00000619464 181 ntBASIC0.24□□□□□ -2.37
PEX3P56589 MIR6755-201ENST00000619993 66 ntBASIC0.24□□□□□ -2.37
PEX3P56589 AC091304.10-201ENST00000641554 121 ntBASIC0.24□□□□□ -2.37
PEX3P56589 Y_RNA.114-201ENST00000363265 113 ntBASIC0.23□□□□□ -2.37
PEX3P56589 Y_RNA.127-201ENST00000363386 109 ntBASIC0.23□□□□□ -2.37
PEX3P56589 Y_RNA.215-201ENST00000364204 112 ntBASIC0.23□□□□□ -2.37
PEX3P56589 RNU6-616P-201ENST00000384353 107 ntBASIC0.23□□□□□ -2.37
PEX3P56589 Y_RNA.540-201ENST00000384638 111 ntBASIC0.23□□□□□ -2.37
PEX3P56589 MIR513C-201ENST00000401352 84 ntBASIC0.23□□□□□ -2.37
PEX3P56589 RNU2-59P-201ENST00000410482 191 ntBASIC0.23□□□□□ -2.37
PEX3P56589 Y_RNA.180-201ENST00000363867 113 ntBASIC0.22□□□□□ -2.37
PEX3P56589 RNU6-1229P-201ENST00000364295 107 ntBASIC0.22□□□□□ -2.37
PEX3P56589 Y_RNA.270-201ENST00000364693 104 ntBASIC0.22□□□□□ -2.37
PEX3P56589 SNORD77B-201ENST00000391112 67 ntBASIC0.22□□□□□ -2.37
PEX3P56589 RN7SKP19-201ENST00000516016 252 ntBASIC0.22□□□□□ -2.37
PEX3P56589 AP001328.1-201ENST00000528550 176 ntBASIC0.22□□□□□ -2.37
PEX3P56589 RNU1-29P-201ENST00000606574 126 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 204.1 ms