Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 Y_RNA.617-201ENST00000410920 90 ntBASIC0.57□□□□□ -2.32
NEK3P51956 SNORA40.8-201ENST00000411034 126 ntBASIC0.57□□□□□ -2.32
NEK3P51956 SNORD71-201ENST00000411292 86 ntBASIC0.57□□□□□ -2.32
NEK3P51956 RNU5E-3P-201ENST00000515913 68 ntBASIC0.57□□□□□ -2.32
NEK3P51956 RNY4P20-201ENST00000516678 93 ntBASIC0.57□□□□□ -2.32
NEK3P51956 RNU6-291P-201ENST00000384720 107 ntBASIC0.56□□□□□ -2.32
NEK3P51956 MIR216A-201ENST00000385063 110 ntBASIC0.56□□□□□ -2.32
NEK3P51956 MIRLET7F2-201ENST00000385277 83 ntBASIC0.56□□□□□ -2.32
NEK3P51956 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
NEK3P51956 SNORA25.12-201ENST00000516202 82 ntBASIC0.56□□□□□ -2.32
NEK3P51956 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
NEK3P51956 Y_RNA.8-201ENST00000362353 102 ntBASIC0.55□□□□□ -2.32
NEK3P51956 RNU6-535P-201ENST00000384722 107 ntBASIC0.55□□□□□ -2.32
NEK3P51956 RNU6-1212P-201ENST00000517023 104 ntBASIC0.55□□□□□ -2.32
NEK3P51956 AC138749.4-201ENST00000563970 127 ntBASIC0.55□□□□□ -2.32
NEK3P51956 RN7SL793P-201ENST00000583259 296 ntBASIC0.55□□□□□ -2.32
NEK3P51956 AL359881.1-201ENST00000602916 267 ntBASIC0.55□□□□□ -2.32
NEK3P51956 AC108081.1-201ENST00000604358 221 ntBASIC0.55□□□□□ -2.32
NEK3P51956 U7.2-201ENST00000607576 63 ntBASIC0.55□□□□□ -2.32
NEK3P51956 U6.109-201ENST00000636749 87 ntBASIC0.55□□□□□ -2.32
NEK3P51956 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
NEK3P51956 MIR936-201ENST00000401264 98 ntBASIC0.54□□□□□ -2.32
NEK3P51956 AC092628.1-201ENST00000436250 252 ntBASIC0.54□□□□□ -2.32
NEK3P51956 RNU6-863P-201ENST00000515989 104 ntBASIC0.54□□□□□ -2.32
NEK3P51956 RNU6-531P-201ENST00000516694 104 ntBASIC0.54□□□□□ -2.32
NEK3P51956 SNORA31.14-201ENST00000516728 116 ntBASIC0.54□□□□□ -2.32
NEK3P51956 AC090625.1-201ENST00000357130 210 ntBASIC0.53□□□□□ -2.32
NEK3P51956 MIR101-2-201ENST00000362195 79 ntBASIC0.53□□□□□ -2.32
NEK3P51956 Y_RNA.32-201ENST00000362589 110 ntBASIC0.53□□□□□ -2.32
NEK3P51956 RNU6-1099P-201ENST00000363533 107 ntBASIC0.53□□□□□ -2.32
NEK3P51956 RNA5SP499-201ENST00000363982 119 ntBASIC0.53□□□□□ -2.32
NEK3P51956 RNA5SP517-201ENST00000364724 117 ntBASIC0.53□□□□□ -2.32
NEK3P51956 Y_RNA.420-201ENST00000384043 110 ntBASIC0.53□□□□□ -2.32
NEK3P51956 RNU6-429P-201ENST00000384582 108 ntBASIC0.53□□□□□ -2.32
NEK3P51956 MIR518A1-201ENST00000385068 85 ntBASIC0.53□□□□□ -2.32
NEK3P51956 RNA5SP136-201ENST00000410906 107 ntBASIC0.53□□□□□ -2.32
NEK3P51956 MIR5087-201ENST00000635826 76 ntBASIC0.53□□□□□ -2.32
NEK3P51956 Y_RNA.56-201ENST00000362798 112 ntBASIC0.52□□□□□ -2.33
NEK3P51956 Y_RNA.114-201ENST00000363265 113 ntBASIC0.52□□□□□ -2.33
NEK3P51956 Y_RNA.119-201ENST00000363301 96 ntBASIC0.52□□□□□ -2.33
NEK3P51956 SNORD18A-201ENST00000363753 72 ntBASIC0.52□□□□□ -2.33
NEK3P51956 RNU6-1229P-201ENST00000364295 107 ntBASIC0.52□□□□□ -2.33
NEK3P51956 Y_RNA.488-201ENST00000384403 102 ntBASIC0.52□□□□□ -2.33
NEK3P51956 Y_RNA.567-201ENST00000384736 106 ntBASIC0.52□□□□□ -2.33
NEK3P51956 MIR569-201ENST00000385228 96 ntBASIC0.52□□□□□ -2.33
NEK3P51956 MIR1270-201ENST00000459320 83 ntBASIC0.52□□□□□ -2.33
NEK3P51956 MIR4639-201ENST00000584938 69 ntBASIC0.52□□□□□ -2.33
NEK3P51956 RNU7-10P-201ENST00000607194 63 ntBASIC0.52□□□□□ -2.33
NEK3P51956 AC243829.3-201ENST00000622177 108 ntBASIC0.52□□□□□ -2.33
NEK3P51956 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.52□□□□□ -2.33
NEK3P51956 Y_RNA.98-201ENST00000363109 102 ntBASIC0.51□□□□□ -2.33
NEK3P51956 SNORD118-201ENST00000363593 134 ntBASIC0.51□□□□□ -2.33
NEK3P51956 SNORA8.2-201ENST00000384372 139 ntBASIC0.51□□□□□ -2.33
NEK3P51956 MIR759-201ENST00000390224 91 ntBASIC0.51□□□□□ -2.33
NEK3P51956 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.51□□□□□ -2.33
NEK3P51956 AC098934.3-201ENST00000430450 190 ntBASIC0.51□□□□□ -2.33
NEK3P51956 RNU6-229P-201ENST00000516614 102 ntBASIC0.51□□□□□ -2.33
NEK3P51956 MTND5P34-201ENST00000568888 325 ntBASIC0.51□□□□□ -2.33
NEK3P51956 Y_RNA.280-201ENST00000364765 112 ntBASIC0.5□□□□□ -2.33
NEK3P51956 MIR644A-201ENST00000385262 94 ntBASIC0.5□□□□□ -2.33
NEK3P51956 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.5□□□□□ -2.33
NEK3P51956 RNU7-48P-201ENST00000458875 63 ntBASIC0.5□□□□□ -2.33
NEK3P51956 MIR4711-201ENST00000578274 70 ntBASIC0.5□□□□□ -2.33
NEK3P51956 MIR3163-201ENST00000581592 73 ntBASIC0.5□□□□□ -2.33
NEK3P51956 MIRLET7D-201ENST00000362263 87 ntBASIC0.49□□□□□ -2.33
NEK3P51956 SNORD114-23-201ENST00000363536 72 ntBASIC0.49□□□□□ -2.33
NEK3P51956 Y_RNA.213-201ENST00000364178 111 ntBASIC0.49□□□□□ -2.33
NEK3P51956 MIR206-201ENST00000384872 86 ntBASIC0.49□□□□□ -2.33
NEK3P51956 MIR7-2-201ENST00000384970 110 ntBASIC0.49□□□□□ -2.33
NEK3P51956 SNORA68.3-201ENST00000515906 83 ntBASIC0.49□□□□□ -2.33
NEK3P51956 RN7SKP19-201ENST00000516016 252 ntBASIC0.49□□□□□ -2.33
NEK3P51956 SCARNA16.5-201ENST00000517114 183 ntBASIC0.49□□□□□ -2.33
NEK3P51956 MIR548H5-201ENST00000580314 60 ntBASIC0.49□□□□□ -2.33
NEK3P51956 RNU6-1321P-201ENST00000390905 107 ntBASIC0.48□□□□□ -2.33
NEK3P51956 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.48□□□□□ -2.33
NEK3P51956 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
NEK3P51956 RNU7-2P-201ENST00000516096 62 ntBASIC0.48□□□□□ -2.33
NEK3P51956 RNA5SP47-201ENST00000517230 109 ntBASIC0.48□□□□□ -2.33
NEK3P51956 AC022523.2-201ENST00000561045 150 ntBASIC0.48□□□□□ -2.33
NEK3P51956 MIR3668-201ENST00000582138 75 ntBASIC0.48□□□□□ -2.33
NEK3P51956 AC105081.1-201ENST00000617727 106 ntBASIC0.48□□□□□ -2.33
NEK3P51956 TUG1_4.1-201ENST00000619464 181 ntBASIC0.48□□□□□ -2.33
NEK3P51956 AC021753.1-201ENST00000635724 168 ntBASIC0.48□□□□□ -2.33
NEK3P51956 MIR6828-201ENST00000636181 60 ntBASIC0.48□□□□□ -2.33
NEK3P51956 Y_RNA.198-201ENST00000364013 98 ntBASIC0.47□□□□□ -2.33
NEK3P51956 RNY1P4-201ENST00000384595 115 ntBASIC0.47□□□□□ -2.33
NEK3P51956 RNU6-1104P-201ENST00000384723 104 ntBASIC0.47□□□□□ -2.33
NEK3P51956 RNA5SP193-201ENST00000410353 107 ntBASIC0.47□□□□□ -2.33
NEK3P51956 AL158147.1-201ENST00000443970 75 ntBASIC0.47□□□□□ -2.33
NEK3P51956 RNU7-200P-201ENST00000516105 62 ntBASIC0.47□□□□□ -2.33
NEK3P51956 MTND5P41-201ENST00000517498 206 ntBASIC0.47□□□□□ -2.33
NEK3P51956 AP001362.1-201ENST00000625165 124 ntBASIC0.47□□□□□ -2.33
NEK3P51956 AC010487.4-201ENST00000637027 61 ntBASIC0.47□□□□□ -2.33
NEK3P51956 SNORD115-19-201ENST00000363098 82 ntBASIC0.46□□□□□ -2.34
NEK3P51956 SNORD115-18-201ENST00000363293 82 ntBASIC0.46□□□□□ -2.34
NEK3P51956 SNORD115-17-201ENST00000364612 82 ntBASIC0.46□□□□□ -2.34
NEK3P51956 RNY1P5-201ENST00000383890 115 ntBASIC0.46□□□□□ -2.34
NEK3P51956 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
NEK3P51956 SNORD28-201ENST00000384706 75 ntBASIC0.46□□□□□ -2.34
NEK3P51956 RNA5SP268-201ENST00000516828 124 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 273.3 ms