Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC036111.3-201ENST00000526389 112 ntBASIC1.76□□□□□ -2.13
LIG3P49916 AC090897.1-201ENST00000580909 226 ntBASIC1.76□□□□□ -2.13
LIG3P49916 MIR4285-201ENST00000581001 85 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNU6-86P-201ENST00000606534 107 ntBASIC1.76□□□□□ -2.13
LIG3P49916 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.76□□□□□ -2.13
LIG3P49916 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.76□□□□□ -2.13
LIG3P49916 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
LIG3P49916 HSBP1P2-201ENST00000299671 229 ntBASIC1.75□□□□□ -2.13
LIG3P49916 RNU6-53P-201ENST00000365367 106 ntBASIC1.75□□□□□ -2.13
LIG3P49916 Y_RNA.363-201ENST00000365529 113 ntBASIC1.75□□□□□ -2.13
LIG3P49916 RNU6-910P-201ENST00000390844 107 ntBASIC1.75□□□□□ -2.13
LIG3P49916 AL353997.5-201ENST00000618886 171 ntBASIC1.75□□□□□ -2.13
LIG3P49916 Y_RNA.119-201ENST00000363301 96 ntBASIC1.74□□□□□ -2.13
LIG3P49916 SNORD111-201ENST00000408139 94 ntBASIC1.74□□□□□ -2.13
LIG3P49916 MIR1257-201ENST00000408490 117 ntBASIC1.74□□□□□ -2.13
LIG3P49916 RNU6-162P-201ENST00000516228 103 ntBASIC1.74□□□□□ -2.13
LIG3P49916 MIR4500-201ENST00000579472 76 ntBASIC1.74□□□□□ -2.13
LIG3P49916 AC023934.1-201ENST00000574529 2389 ntBASIC1.74□□□□□ -2.13
LIG3P49916 RNU1-17P-201ENST00000363022 152 ntBASIC1.73□□□□□ -2.13
LIG3P49916 RNU1-36P-201ENST00000365130 165 ntBASIC1.73□□□□□ -2.13
LIG3P49916 RNU7-21P-201ENST00000459430 62 ntBASIC1.73□□□□□ -2.13
LIG3P49916 AC106800.4-201ENST00000614905 153 ntBASIC1.73□□□□□ -2.13
LIG3P49916 AC008163.1-202ENST00000636004 2889 ntBASIC1.73□□□□□ -2.13
LIG3P49916 RNU6-1244P-201ENST00000363614 108 ntBASIC1.72□□□□□ -2.13
LIG3P49916 Y_RNA.173-201ENST00000363776 113 ntBASIC1.72□□□□□ -2.13
LIG3P49916 RNA5SP190-201ENST00000365222 118 ntBASIC1.72□□□□□ -2.13
LIG3P49916 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.72□□□□□ -2.13
LIG3P49916 SNORD83.1-201ENST00000411362 77 ntBASIC1.72□□□□□ -2.13
LIG3P49916 BTF3P4-201ENST00000418852 495 ntBASIC1.72□□□□□ -2.13
LIG3P49916 RNU7-185P-201ENST00000459215 60 ntBASIC1.72□□□□□ -2.13
LIG3P49916 RNU7-90P-201ENST00000459216 62 ntBASIC1.72□□□□□ -2.13
LIG3P49916 snoU13.21-201ENST00000459368 105 ntBASIC1.72□□□□□ -2.13
LIG3P49916 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.72□□□□□ -2.13
LIG3P49916 AC023827.1-201ENST00000569247 97 ntBASIC1.72□□□□□ -2.13
LIG3P49916 MIR4491-201ENST00000581087 68 ntBASIC1.72□□□□□ -2.13
LIG3P49916 AC103810.7-201ENST00000607821 91 ntBASIC1.72□□□□□ -2.13
LIG3P49916 RNU6-934P-201ENST00000365154 107 ntBASIC1.71□□□□□ -2.14
LIG3P49916 SNORD79.1-201ENST00000516069 84 ntBASIC1.71□□□□□ -2.14
LIG3P49916 RNU6-403P-201ENST00000363163 104 ntBASIC1.7□□□□□ -2.14
LIG3P49916 RNU4-58P-201ENST00000363192 141 ntBASIC1.7□□□□□ -2.14
LIG3P49916 RNU6-1125P-201ENST00000363601 107 ntBASIC1.7□□□□□ -2.14
LIG3P49916 SNORD116-10-201ENST00000363791 102 ntBASIC1.7□□□□□ -2.14
LIG3P49916 RNU6-480P-201ENST00000384332 107 ntBASIC1.7□□□□□ -2.14
LIG3P49916 SNORA72.6-201ENST00000384520 129 ntBASIC1.7□□□□□ -2.14
LIG3P49916 SNORD13-201ENST00000459299 104 ntBASIC1.7□□□□□ -2.14
LIG3P49916 SNORA70.22-201ENST00000517160 124 ntBASIC1.7□□□□□ -2.14
LIG3P49916 AC026421.1-201ENST00000519101 163 ntBASIC1.7□□□□□ -2.14
LIG3P49916 MIR502-201ENST00000606349 86 ntBASIC1.7□□□□□ -2.14
LIG3P49916 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.7□□□□□ -2.14
LIG3P49916 RNU6-1134P-201ENST00000365156 101 ntBASIC1.69□□□□□ -2.14
LIG3P49916 Y_RNA.588-201ENST00000391254 102 ntBASIC1.69□□□□□ -2.14
LIG3P49916 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.69□□□□□ -2.14
LIG3P49916 RNU4-83P-201ENST00000410863 133 ntBASIC1.69□□□□□ -2.14
LIG3P49916 SNRPGP12-201ENST00000449481 213 ntBASIC1.69□□□□□ -2.14
LIG3P49916 RNA5SP458-201ENST00000516188 119 ntBASIC1.69□□□□□ -2.14
LIG3P49916 MIR4771-2-201ENST00000577758 74 ntBASIC1.69□□□□□ -2.14
LIG3P49916 MIR4255-201ENST00000579351 72 ntBASIC1.69□□□□□ -2.14
LIG3P49916 MIR4771-1-201ENST00000582617 74 ntBASIC1.69□□□□□ -2.14
LIG3P49916 SNORD58A-201ENST00000383875 65 ntBASIC1.68□□□□□ -2.14
LIG3P49916 RNU6-571P-201ENST00000384128 107 ntBASIC1.68□□□□□ -2.14
LIG3P49916 SNORD12-201ENST00000391002 90 ntBASIC1.68□□□□□ -2.14
LIG3P49916 RNU6-994P-201ENST00000410507 111 ntBASIC1.68□□□□□ -2.14
LIG3P49916 RNU1-98P-201ENST00000458992 160 ntBASIC1.68□□□□□ -2.14
LIG3P49916 SNORA72.7-201ENST00000516349 94 ntBASIC1.68□□□□□ -2.14
LIG3P49916 SNORA25.16-201ENST00000516741 121 ntBASIC1.68□□□□□ -2.14
LIG3P49916 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.68□□□□□ -2.14
LIG3P49916 MIR222-201ENST00000384992 110 ntBASIC1.67□□□□□ -2.14
LIG3P49916 MIR1302-4-201ENST00000408701 150 ntBASIC1.67□□□□□ -2.14
LIG3P49916 RNU6-531P-201ENST00000516694 104 ntBASIC1.67□□□□□ -2.14
LIG3P49916 BX276092.1-201ENST00000427368 251 ntBASIC1.66□□□□□ -2.14
LIG3P49916 RPS26P5-201ENST00000418544 335 ntBASIC1.65□□□□□ -2.15
LIG3P49916 RNU6-1194P-201ENST00000516208 104 ntBASIC1.65□□□□□ -2.15
LIG3P49916 RNU7-40P-201ENST00000516397 64 ntBASIC1.65□□□□□ -2.15
LIG3P49916 RNU6-850P-201ENST00000516934 103 ntBASIC1.65□□□□□ -2.15
LIG3P49916 Y_RNA.57-201ENST00000362806 113 ntBASIC1.64□□□□□ -2.15
LIG3P49916 Y_RNA.190-201ENST00000363964 101 ntBASIC1.64□□□□□ -2.15
LIG3P49916 SNORD73B-201ENST00000364394 72 ntBASIC1.64□□□□□ -2.15
LIG3P49916 MIR181B2-201ENST00000385004 89 ntBASIC1.64□□□□□ -2.15
LIG3P49916 MIR125B2-201ENST00000385128 89 ntBASIC1.64□□□□□ -2.15
LIG3P49916 SNORA17.3-201ENST00000391159 129 ntBASIC1.64□□□□□ -2.15
LIG3P49916 AC015818.7-201ENST00000428754 109 ntBASIC1.64□□□□□ -2.15
LIG3P49916 AC087499.7-201ENST00000441958 109 ntBASIC1.64□□□□□ -2.15
LIG3P49916 MIR8066-201ENST00000617280 78 ntBASIC1.64□□□□□ -2.15
LIG3P49916 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LIG3P49916 MIR320A-201ENST00000385302 82 ntBASIC1.63□□□□□ -2.15
LIG3P49916 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.63□□□□□ -2.15
LIG3P49916 Y_RNA.13-201ENST00000362403 112 ntBASIC1.62□□□□□ -2.15
LIG3P49916 AL603825.1-201ENST00000438481 80 ntBASIC1.62□□□□□ -2.15
LIG3P49916 AC020891.4-201ENST00000605745 93 ntBASIC1.62□□□□□ -2.15
LIG3P49916 MIR6082-201ENST00000613604 109 ntBASIC1.62□□□□□ -2.15
LIG3P49916 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
LIG3P49916 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LIG3P49916 MIR101-2-201ENST00000362195 79 ntBASIC1.61□□□□□ -2.15
LIG3P49916 SNORA25-201ENST00000384384 134 ntBASIC1.61□□□□□ -2.15
LIG3P49916 MIR450A2-201ENST00000385022 100 ntBASIC1.61□□□□□ -2.15
LIG3P49916 AC067940.1-201ENST00000458411 300 ntBASIC1.61□□□□□ -2.15
LIG3P49916 RNU6-765P-201ENST00000516916 99 ntBASIC1.61□□□□□ -2.15
LIG3P49916 RNU6-762P-201ENST00000517107 102 ntBASIC1.61□□□□□ -2.15
LIG3P49916 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.61□□□□□ -2.15
LIG3P49916 AL513043.2-201ENST00000573941 143 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 314.8 ms