Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 Y_RNA.531-201ENST00000384589 121 ntBASIC0.63□□□□□ -2.31
CTCFP49711 MIR140-201ENST00000385282 100 ntBASIC0.63□□□□□ -2.31
CTCFP49711 Y_RNA.690-201ENST00000516603 95 ntBASIC0.63□□□□□ -2.31
CTCFP49711 RNA5SP33-201ENST00000516687 98 ntBASIC0.63□□□□□ -2.31
CTCFP49711 RNU6-448P-201ENST00000517052 107 ntBASIC0.63□□□□□ -2.31
CTCFP49711 AC021443.1-201ENST00000604478 211 ntBASIC0.63□□□□□ -2.31
CTCFP49711 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.63□□□□□ -2.31
CTCFP49711 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
CTCFP49711 Y_RNA.13-201ENST00000362403 112 ntBASIC0.62□□□□□ -2.31
CTCFP49711 RNU6-151P-201ENST00000364158 107 ntBASIC0.62□□□□□ -2.31
CTCFP49711 SNORD18B-201ENST00000365659 72 ntBASIC0.62□□□□□ -2.31
CTCFP49711 RNU6-449P-201ENST00000383914 107 ntBASIC0.62□□□□□ -2.31
CTCFP49711 RNU6-945P-201ENST00000383947 107 ntBASIC0.62□□□□□ -2.31
CTCFP49711 AC114737.2-201ENST00000421583 173 ntBASIC0.62□□□□□ -2.31
CTCFP49711 RNU4-54P-201ENST00000516428 129 ntBASIC0.62□□□□□ -2.31
CTCFP49711 MIR548AE2-201ENST00000583456 67 ntBASIC0.62□□□□□ -2.31
CTCFP49711 MIR6082-201ENST00000613604 109 ntBASIC0.62□□□□□ -2.31
CTCFP49711 uc_338.17-201ENST00000619633 179 ntBASIC0.62□□□□□ -2.31
CTCFP49711 RNU6-403P-201ENST00000363163 104 ntBASIC0.61□□□□□ -2.31
CTCFP49711 RNU4-67P-201ENST00000364569 141 ntBASIC0.61□□□□□ -2.31
CTCFP49711 SNORD116-18-201ENST00000383961 92 ntBASIC0.61□□□□□ -2.31
CTCFP49711 SNORA32-201ENST00000384072 121 ntBASIC0.61□□□□□ -2.31
CTCFP49711 RNU6-886P-201ENST00000384319 105 ntBASIC0.61□□□□□ -2.31
CTCFP49711 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
CTCFP49711 Y_RNA.617-201ENST00000410920 90 ntBASIC0.61□□□□□ -2.31
CTCFP49711 RNU7-164P-201ENST00000459221 62 ntBASIC0.61□□□□□ -2.31
CTCFP49711 RNU6-794P-201ENST00000517261 64 ntBASIC0.61□□□□□ -2.31
CTCFP49711 Y_RNA.150-201ENST00000363562 102 ntBASIC0.6□□□□□ -2.31
CTCFP49711 RNU6-804P-201ENST00000384286 107 ntBASIC0.6□□□□□ -2.31
CTCFP49711 RNU7-123P-201ENST00000515911 60 ntBASIC0.6□□□□□ -2.31
CTCFP49711 RN7SKP12-201ENST00000516275 143 ntBASIC0.6□□□□□ -2.31
CTCFP49711 RNU6-765P-201ENST00000516916 99 ntBASIC0.6□□□□□ -2.31
CTCFP49711 Y_RNA.366-201ENST00000365540 102 ntBASIC0.59□□□□□ -2.31
CTCFP49711 RNU6-460P-201ENST00000391158 108 ntBASIC0.59□□□□□ -2.31
CTCFP49711 MIR3144-201ENST00000579460 79 ntBASIC0.59□□□□□ -2.31
CTCFP49711 AC108081.1-201ENST00000604358 221 ntBASIC0.59□□□□□ -2.31
CTCFP49711 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.59□□□□□ -2.31
CTCFP49711 Y_RNA.270-201ENST00000364693 104 ntBASIC0.58□□□□□ -2.32
CTCFP49711 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.58□□□□□ -2.32
CTCFP49711 MIR1270-201ENST00000459320 83 ntBASIC0.58□□□□□ -2.32
CTCFP49711 SNORD114-15-201ENST00000364687 72 ntBASIC0.57□□□□□ -2.32
CTCFP49711 Y_RNA.298-201ENST00000364960 107 ntBASIC0.57□□□□□ -2.32
CTCFP49711 Y_RNA.398-201ENST00000383952 99 ntBASIC0.57□□□□□ -2.32
CTCFP49711 SNORA50A-201ENST00000384225 134 ntBASIC0.57□□□□□ -2.32
CTCFP49711 RNA5SP299-201ENST00000391203 116 ntBASIC0.57□□□□□ -2.32
CTCFP49711 SNORA25.16-201ENST00000516741 121 ntBASIC0.57□□□□□ -2.32
CTCFP49711 RNU7-137P-201ENST00000516788 62 ntBASIC0.57□□□□□ -2.32
CTCFP49711 RNA5SP117-201ENST00000365294 118 ntBASIC0.56□□□□□ -2.32
CTCFP49711 SNORA72.6-201ENST00000384520 129 ntBASIC0.56□□□□□ -2.32
CTCFP49711 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
CTCFP49711 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
CTCFP49711 SNORD67.1-201ENST00000516618 108 ntBASIC0.56□□□□□ -2.32
CTCFP49711 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.56□□□□□ -2.32
CTCFP49711 AL359881.1-201ENST00000602916 267 ntBASIC0.56□□□□□ -2.32
CTCFP49711 AC098479.1-201ENST00000609225 154 ntBASIC0.56□□□□□ -2.32
CTCFP49711 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.56□□□□□ -2.32
CTCFP49711 Y_RNA.8-201ENST00000362353 102 ntBASIC0.55□□□□□ -2.32
CTCFP49711 RNU6-915P-201ENST00000364943 103 ntBASIC0.55□□□□□ -2.32
CTCFP49711 RNA5SP94-201ENST00000516917 108 ntBASIC0.55□□□□□ -2.32
CTCFP49711 MIR3678-201ENST00000578455 94 ntBASIC0.55□□□□□ -2.32
CTCFP49711 MIR3121-201ENST00000579680 77 ntBASIC0.55□□□□□ -2.32
CTCFP49711 AL137067.1-201ENST00000615933 120 ntBASIC0.55□□□□□ -2.32
CTCFP49711 Y_RNA.32-201ENST00000362589 110 ntBASIC0.54□□□□□ -2.32
CTCFP49711 RNA5SP98-201ENST00000363158 137 ntBASIC0.54□□□□□ -2.32
CTCFP49711 Y_RNA.555-201ENST00000384673 110 ntBASIC0.54□□□□□ -2.32
CTCFP49711 MIR513C-201ENST00000401352 84 ntBASIC0.54□□□□□ -2.32
CTCFP49711 RNU4-69P-201ENST00000410677 143 ntBASIC0.54□□□□□ -2.32
CTCFP49711 SNORA25.12-201ENST00000516202 82 ntBASIC0.54□□□□□ -2.32
CTCFP49711 RNU6-758P-201ENST00000516292 89 ntBASIC0.54□□□□□ -2.32
CTCFP49711 RNY4P20-201ENST00000516678 93 ntBASIC0.54□□□□□ -2.32
CTCFP49711 uc_338.16-201ENST00000621804 95 ntBASIC0.54□□□□□ -2.32
CTCFP49711 SNORD114-10-201ENST00000363409 72 ntBASIC0.53□□□□□ -2.32
CTCFP49711 RNU6-291P-201ENST00000384720 107 ntBASIC0.53□□□□□ -2.32
CTCFP49711 RNU6-679P-201ENST00000391003 106 ntBASIC0.53□□□□□ -2.32
CTCFP49711 AC108059.2-201ENST00000434626 151 ntBASIC0.53□□□□□ -2.32
CTCFP49711 RNU5E-3P-201ENST00000515913 68 ntBASIC0.53□□□□□ -2.32
CTCFP49711 MTND5P41-201ENST00000517498 206 ntBASIC0.53□□□□□ -2.32
CTCFP49711 AC022523.2-201ENST00000561045 150 ntBASIC0.53□□□□□ -2.32
CTCFP49711 MTND5P34-201ENST00000568888 325 ntBASIC0.53□□□□□ -2.32
CTCFP49711 MIR548X2-201ENST00000579776 100 ntBASIC0.53□□□□□ -2.32
CTCFP49711 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.33
CTCFP49711 SNORD18A-201ENST00000363753 72 ntBASIC0.52□□□□□ -2.33
CTCFP49711 Y_RNA.299-201ENST00000364973 94 ntBASIC0.52□□□□□ -2.33
CTCFP49711 Y_RNA.400-201ENST00000383963 111 ntBASIC0.52□□□□□ -2.33
CTCFP49711 AC092634.7-201ENST00000621022 103 ntBASIC0.52□□□□□ -2.33
CTCFP49711 AP001340.1-201ENST00000624405 217 ntBASIC0.52□□□□□ -2.33
CTCFP49711 U6.109-201ENST00000636749 87 ntBASIC0.52□□□□□ -2.33
CTCFP49711 MIR409-201ENST00000362237 79 ntBASIC0.51□□□□□ -2.33
CTCFP49711 RNA5SP133-201ENST00000363368 119 ntBASIC0.51□□□□□ -2.33
CTCFP49711 Y_RNA.185-201ENST00000363894 100 ntBASIC0.51□□□□□ -2.33
CTCFP49711 RNA5SP517-201ENST00000364724 117 ntBASIC0.51□□□□□ -2.33
CTCFP49711 Y_RNA.536-201ENST00000384621 113 ntBASIC0.51□□□□□ -2.33
CTCFP49711 RNU6-1104P-201ENST00000384723 104 ntBASIC0.51□□□□□ -2.33
CTCFP49711 MIR569-201ENST00000385228 96 ntBASIC0.51□□□□□ -2.33
CTCFP49711 MIR644A-201ENST00000385262 94 ntBASIC0.51□□□□□ -2.33
CTCFP49711 RNU6-1194P-201ENST00000516208 104 ntBASIC0.51□□□□□ -2.33
CTCFP49711 Y_RNA.692-201ENST00000516627 105 ntBASIC0.51□□□□□ -2.33
CTCFP49711 RNU6-531P-201ENST00000516694 104 ntBASIC0.51□□□□□ -2.33
CTCFP49711 SNORA31.14-201ENST00000516728 116 ntBASIC0.51□□□□□ -2.33
CTCFP49711 AC138749.4-201ENST00000563970 127 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms