Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
HNF4AP41235 RNU6-1321P-201ENST00000390905 107 ntBASIC0.68□□□□□ -2.3
HNF4AP41235 AL606753.1-201ENST00000427435 87 ntBASIC0.68□□□□□ -2.3
HNF4AP41235 SNORD33.1-201ENST00000516213 88 ntBASIC0.68□□□□□ -2.3
HNF4AP41235 SNORA25.16-201ENST00000516741 121 ntBASIC0.68□□□□□ -2.3
HNF4AP41235 CYP3A137P-201ENST00000562436 69 ntBASIC0.68□□□□□ -2.3
HNF4AP41235 Y_RNA.13-201ENST00000362403 112 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 Y_RNA.42-201ENST00000362660 108 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 SNORD115-19-201ENST00000363098 82 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 SNORD115-18-201ENST00000363293 82 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNY4P6-201ENST00000363667 96 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 SNORD115-17-201ENST00000364612 82 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 SNORD115-35-201ENST00000365122 82 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 Y_RNA.353-201ENST00000365440 108 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 Y_RNA.563-201ENST00000384707 108 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 MIR508-201ENST00000384857 115 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-447P-201ENST00000410293 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-1118P-201ENST00000410382 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-1076P-201ENST00000410397 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-355P-201ENST00000410427 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-791P-201ENST00000410467 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-705P-201ENST00000410601 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-1100P-201ENST00000410691 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-860P-201ENST00000410860 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-1217P-201ENST00000411276 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-785P-201ENST00000411324 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 AC008267.6-201ENST00000441664 139 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 Y_RNA.649-201ENST00000459077 103 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU7-2P-201ENST00000516096 62 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNU6-789P-201ENST00000517105 102 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 AC138749.4-201ENST00000563970 127 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 U6.90-201ENST00000614007 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 U6.70-201ENST00000620287 104 ntBASIC0.67□□□□□ -2.3
HNF4AP41235 RNA5SP133-201ENST00000363368 119 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 Y_RNA.448-201ENST00000384185 108 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 MIR548A1-201ENST00000385041 97 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 RNU6-1168P-201ENST00000390831 104 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 RNU1-119P-201ENST00000391122 165 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 MIR548J-201ENST00000408833 112 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 RNA5SP121-201ENST00000516537 101 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 MIR6082-201ENST00000613604 109 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 U6.109-201ENST00000636749 87 ntBASIC0.66□□□□□ -2.3
HNF4AP41235 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.65□□□□□ -2.31
HNF4AP41235 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
HNF4AP41235 SNORA72.6-201ENST00000384520 129 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 RNU6-62P-201ENST00000516526 102 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 RNU6-521P-201ENST00000516663 105 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 RNU6-531P-201ENST00000516694 104 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 AC133485.1-201ENST00000567176 124 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 AC138907.6-201ENST00000568401 126 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 AC090897.1-201ENST00000580909 226 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 AL590095.2-201ENST00000604136 117 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 U6.95-201ENST00000636931 70 ntBASIC0.65□□□□□ -2.31
HNF4AP41235 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
HNF4AP41235 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
HNF4AP41235 Y_RNA.119-201ENST00000363301 96 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 Y_RNA.226-201ENST00000364337 114 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 Y_RNA.362-201ENST00000365518 110 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 Y_RNA.549-201ENST00000384657 102 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 SNORA19-201ENST00000384737 128 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 MIR548A3-201ENST00000385297 97 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 AC244098.3-201ENST00000424803 96 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 AC007012.1-201ENST00000567192 175 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 AC011195.1-201ENST00000578177 177 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 AL035470.1-201ENST00000622571 220 ntBASIC0.64□□□□□ -2.31
HNF4AP41235 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
HNF4AP41235 RNU6-363P-201ENST00000362895 105 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 RNA5SP205-201ENST00000364653 136 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 RNY1P2-201ENST00000364820 117 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 Y_RNA.328-201ENST00000365208 113 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
HNF4AP41235 RNU6-1154P-201ENST00000391001 104 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 MIR1287-201ENST00000408492 90 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 RNU7-48P-201ENST00000458875 63 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 RNU6-479P-201ENST00000516348 105 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 RNU4-54P-201ENST00000516428 129 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 MTND5P34-201ENST00000568888 325 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.63□□□□□ -2.31
HNF4AP41235 MIR376B-201ENST00000614515 100 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 MIR6788-201ENST00000618842 66 ntBASIC0.63□□□□□ -2.31
HNF4AP41235 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
HNF4AP41235 Y_RNA.98-201ENST00000363109 102 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 RNU4-67P-201ENST00000364569 141 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 MIR34C-201ENST00000384831 77 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 MIR573-201ENST00000384964 99 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 SNORA7.5-201ENST00000410672 110 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 AL353813.1-201ENST00000440700 253 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 AC002350.1-201ENST00000490759 375 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 RNU6-448P-201ENST00000517052 107 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 DEFB131E-201ENST00000532329 154 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 MIR4679-2-201ENST00000578358 77 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 MIR4714-201ENST00000580728 77 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 AL078603.1-201ENST00000603824 313 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 AL670379.3-201ENST00000605040 251 ntBASIC0.62□□□□□ -2.31
HNF4AP41235 RNU6-679P-201ENST00000391003 106 ntBASIC0.61□□□□□ -2.31
HNF4AP41235 SNORD100-201ENST00000408573 76 ntBASIC0.61□□□□□ -2.31
HNF4AP41235 RPL39P34-201ENST00000477141 156 ntBASIC0.61□□□□□ -2.31
HNF4AP41235 RNU6-765P-201ENST00000516916 99 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms