Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.58□□□□□ -2.32
SOX3P41225 RNU6-1211P-201ENST00000459179 105 ntBASIC0.58□□□□□ -2.32
SOX3P41225 SNORA25.16-201ENST00000516741 121 ntBASIC0.58□□□□□ -2.32
SOX3P41225 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.58□□□□□ -2.32
SOX3P41225 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.57□□□□□ -2.32
SOX3P41225 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
SOX3P41225 Y_RNA.13-201ENST00000362403 112 ntBASIC0.57□□□□□ -2.32
SOX3P41225 RNU6-704P-201ENST00000364162 103 ntBASIC0.57□□□□□ -2.32
SOX3P41225 SNORD58C-201ENST00000365223 64 ntBASIC0.57□□□□□ -2.32
SOX3P41225 SNORD100-201ENST00000408573 76 ntBASIC0.57□□□□□ -2.32
SOX3P41225 RNU4-69P-201ENST00000410677 143 ntBASIC0.57□□□□□ -2.32
SOX3P41225 RNA5SP222-201ENST00000411039 105 ntBASIC0.57□□□□□ -2.32
SOX3P41225 MIR3612-201ENST00000579753 87 ntBASIC0.57□□□□□ -2.32
SOX3P41225 MIR7111-201ENST00000619751 72 ntBASIC0.57□□□□□ -2.32
SOX3P41225 RNU6-647P-201ENST00000364243 107 ntBASIC0.56□□□□□ -2.32
SOX3P41225 SNORD50.2-201ENST00000365465 70 ntBASIC0.56□□□□□ -2.32
SOX3P41225 RNU6-616P-201ENST00000384353 107 ntBASIC0.56□□□□□ -2.32
SOX3P41225 MIR613-201ENST00000385248 95 ntBASIC0.56□□□□□ -2.32
SOX3P41225 AC002350.1-201ENST00000490759 375 ntBASIC0.56□□□□□ -2.32
SOX3P41225 RNU6-772P-201ENST00000516042 105 ntBASIC0.56□□□□□ -2.32
SOX3P41225 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.56□□□□□ -2.32
SOX3P41225 AC138749.4-201ENST00000563970 127 ntBASIC0.56□□□□□ -2.32
SOX3P41225 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.56□□□□□ -2.32
SOX3P41225 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.56□□□□□ -2.32
SOX3P41225 MIR18A-201ENST00000362310 71 ntBASIC0.55□□□□□ -2.32
SOX3P41225 RNU4-45P-201ENST00000365469 141 ntBASIC0.55□□□□□ -2.32
SOX3P41225 Y_RNA.528-201ENST00000384575 108 ntBASIC0.55□□□□□ -2.32
SOX3P41225 MIR206-201ENST00000384872 86 ntBASIC0.55□□□□□ -2.32
SOX3P41225 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
SOX3P41225 RNU6-1321P-201ENST00000390905 107 ntBASIC0.55□□□□□ -2.32
SOX3P41225 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
SOX3P41225 RNU6-448P-201ENST00000517052 107 ntBASIC0.55□□□□□ -2.32
SOX3P41225 MTND5P34-201ENST00000568888 325 ntBASIC0.55□□□□□ -2.32
SOX3P41225 MIR6082-201ENST00000613604 109 ntBASIC0.55□□□□□ -2.32
SOX3P41225 TUG1_4.1-201ENST00000619464 181 ntBASIC0.55□□□□□ -2.32
SOX3P41225 MIR1255B1-201ENST00000636325 63 ntBASIC0.55□□□□□ -2.32
SOX3P41225 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
SOX3P41225 Y_RNA.71-201ENST00000362892 104 ntBASIC0.54□□□□□ -2.32
SOX3P41225 RNU6-403P-201ENST00000363163 104 ntBASIC0.54□□□□□ -2.32
SOX3P41225 Y_RNA.198-201ENST00000364013 98 ntBASIC0.54□□□□□ -2.32
SOX3P41225 Y_RNA.299-201ENST00000364973 94 ntBASIC0.54□□□□□ -2.32
SOX3P41225 RNU6-1061P-201ENST00000516530 99 ntBASIC0.54□□□□□ -2.32
SOX3P41225 MTND5P18-201ENST00000445624 1801 ntBASIC0.53□□□□□ -2.32
SOX3P41225 RNA5SP133-201ENST00000363368 119 ntBASIC0.53□□□□□ -2.32
SOX3P41225 MIR548M-201ENST00000408260 86 ntBASIC0.53□□□□□ -2.32
SOX3P41225 AL353813.1-201ENST00000440700 253 ntBASIC0.53□□□□□ -2.32
SOX3P41225 RNU6-659P-201ENST00000516454 104 ntBASIC0.53□□□□□ -2.32
SOX3P41225 RNU6-531P-201ENST00000516694 104 ntBASIC0.53□□□□□ -2.32
SOX3P41225 RNU7-6P-201ENST00000516845 62 ntBASIC0.53□□□□□ -2.32
SOX3P41225 RNU6-765P-201ENST00000516916 99 ntBASIC0.53□□□□□ -2.32
SOX3P41225 MIR6513-201ENST00000621188 64 ntBASIC0.53□□□□□ -2.32
SOX3P41225 U6.109-201ENST00000636749 87 ntBASIC0.53□□□□□ -2.32
SOX3P41225 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.53□□□□□ -2.32
SOX3P41225 SNORD114-10-201ENST00000363409 72 ntBASIC0.52□□□□□ -2.33
SOX3P41225 RNA5SP245-201ENST00000364239 121 ntBASIC0.52□□□□□ -2.33
SOX3P41225 RNY1P2-201ENST00000364820 117 ntBASIC0.52□□□□□ -2.33
SOX3P41225 Y_RNA.344-201ENST00000365381 112 ntBASIC0.52□□□□□ -2.33
SOX3P41225 SNORA36.2-201ENST00000384004 127 ntBASIC0.52□□□□□ -2.33
SOX3P41225 MIR598-201ENST00000384868 97 ntBASIC0.52□□□□□ -2.33
SOX3P41225 AP003327.1-201ENST00000529684 127 ntBASIC0.52□□□□□ -2.33
SOX3P41225 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.52□□□□□ -2.33
SOX3P41225 AC025166.1-201ENST00000612411 163 ntBASIC0.52□□□□□ -2.33
SOX3P41225 RNA5SP347-201ENST00000362445 119 ntBASIC0.51□□□□□ -2.33
SOX3P41225 Y_RNA.32-201ENST00000362589 110 ntBASIC0.51□□□□□ -2.33
SOX3P41225 SNORD115-19-201ENST00000363098 82 ntBASIC0.51□□□□□ -2.33
SOX3P41225 SNORD115-18-201ENST00000363293 82 ntBASIC0.51□□□□□ -2.33
SOX3P41225 RNA5SP499-201ENST00000363982 119 ntBASIC0.51□□□□□ -2.33
SOX3P41225 SNORD115-17-201ENST00000364612 82 ntBASIC0.51□□□□□ -2.33
SOX3P41225 Y_RNA.261-201ENST00000364631 102 ntBASIC0.51□□□□□ -2.33
SOX3P41225 RNA5SP117-201ENST00000365294 118 ntBASIC0.51□□□□□ -2.33
SOX3P41225 Y_RNA.448-201ENST00000384185 108 ntBASIC0.51□□□□□ -2.33
SOX3P41225 SNORA72.6-201ENST00000384520 129 ntBASIC0.51□□□□□ -2.33
SOX3P41225 RNU6-291P-201ENST00000384720 107 ntBASIC0.51□□□□□ -2.33
SOX3P41225 MIR140-201ENST00000385282 100 ntBASIC0.51□□□□□ -2.33
SOX3P41225 RNA5SP136-201ENST00000410906 107 ntBASIC0.51□□□□□ -2.33
SOX3P41225 AC018659.1-201ENST00000551083 169 ntBASIC0.51□□□□□ -2.33
SOX3P41225 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
SOX3P41225 uc_338.16-201ENST00000621804 95 ntBASIC0.51□□□□□ -2.33
SOX3P41225 MIR3914-2-201ENST00000637339 95 ntBASIC0.51□□□□□ -2.33
SOX3P41225 Y_RNA.119-201ENST00000363301 96 ntBASIC0.5□□□□□ -2.33
SOX3P41225 SNORD115-35-201ENST00000365122 82 ntBASIC0.5□□□□□ -2.33
SOX3P41225 RNU6-81P-201ENST00000365608 104 ntBASIC0.5□□□□□ -2.33
SOX3P41225 RNU6-80P-201ENST00000384195 107 ntBASIC0.5□□□□□ -2.33
SOX3P41225 RNU6-959P-201ENST00000384671 107 ntBASIC0.5□□□□□ -2.33
SOX3P41225 MIR644A-201ENST00000385262 94 ntBASIC0.5□□□□□ -2.33
SOX3P41225 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
SOX3P41225 RNU7-2P-201ENST00000516096 62 ntBASIC0.5□□□□□ -2.33
SOX3P41225 SNORD33.1-201ENST00000516213 88 ntBASIC0.5□□□□□ -2.33
SOX3P41225 MIR3910-1-201ENST00000580936 111 ntBASIC0.5□□□□□ -2.33
SOX3P41225 MIR376B-201ENST00000614515 100 ntBASIC0.5□□□□□ -2.33
SOX3P41225 PVT1_3.1-201ENST00000620853 95 ntBASIC0.5□□□□□ -2.33
SOX3P41225 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
SOX3P41225 AL157777.2-201ENST00000258070 137 ntBASIC0.49□□□□□ -2.33
SOX3P41225 SNORA63.5-201ENST00000363548 123 ntBASIC0.49□□□□□ -2.33
SOX3P41225 MIR539-201ENST00000365690 78 ntBASIC0.49□□□□□ -2.33
SOX3P41225 Y_RNA.549-201ENST00000384657 102 ntBASIC0.49□□□□□ -2.33
SOX3P41225 MIR34C-201ENST00000384831 77 ntBASIC0.49□□□□□ -2.33
SOX3P41225 MIR548D2-201ENST00000384955 97 ntBASIC0.49□□□□□ -2.33
SOX3P41225 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.49□□□□□ -2.33
SOX3P41225 AC098934.3-201ENST00000430450 190 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 230.6 ms