Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-508P-201ENST00000363231 103 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNA5SP133-201ENST00000363368 119 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNU6-682P-201ENST00000363843 106 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 Y_RNA.366-201ENST00000365540 102 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 Y_RNA.441-201ENST00000384123 112 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 Y_RNA.476-201ENST00000384347 108 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 SNORD37.2-201ENST00000391075 66 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNU7-164P-201ENST00000459221 62 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNU6-1194P-201ENST00000516208 104 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 SNORD67.1-201ENST00000516618 108 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNU6-531P-201ENST00000516694 104 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 AL359881.1-201ENST00000602916 267 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 AC021443.1-201ENST00000604478 211 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.25□□□□□ -2.37
PTPN4P29074 RNU4-58P-201ENST00000363192 141 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 Y_RNA.584-201ENST00000391090 114 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 SNRPGP12-201ENST00000449481 213 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 MIR1270-201ENST00000459320 83 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 RNU7-123P-201ENST00000515911 60 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 Y_RNA.681-201ENST00000516445 113 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 RNA5SP268-201ENST00000516828 124 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 DEFB131E-201ENST00000532329 154 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 U6.109-201ENST00000636749 87 ntBASIC0.24□□□□□ -2.37
PTPN4P29074 Y_RNA.29-201ENST00000362570 113 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 SNORD114-10-201ENST00000363409 72 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 SNORD18B-201ENST00000365659 72 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 RNU6-1135P-201ENST00000411083 103 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 Y_RNA.662-201ENST00000516028 97 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 Y_RNA.686-201ENST00000516548 134 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 Y_RNA.700-201ENST00000516806 100 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 RNA5SP47-201ENST00000517230 109 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 AC138749.4-201ENST00000563970 127 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 MIR6828-201ENST00000636181 60 ntBASIC0.23□□□□□ -2.37
PTPN4P29074 RNU4-67P-201ENST00000364569 141 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 RNU6-309P-201ENST00000364573 106 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 AL603914.1-201ENST00000401964 204 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 Y_RNA.690-201ENST00000516603 95 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 SCARNA16.5-201ENST00000517114 183 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 AC098479.1-201ENST00000609225 154 ntBASIC0.22□□□□□ -2.37
PTPN4P29074 RNA5SP245-201ENST00000364239 121 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 RNU6-1229P-201ENST00000364295 107 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 Y_RNA.272-201ENST00000364696 102 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 Y_RNA.298-201ENST00000364960 107 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 SNORD28-201ENST00000384706 75 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 RNU4-69P-201ENST00000410677 143 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 SUMO1P3-201ENST00000439961 304 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 SNORA81.3-201ENST00000517283 198 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 AC112693.2-201ENST00000556538 232 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 MIR4639-201ENST00000584938 69 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 MIR7107-201ENST00000611489 80 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 MIR2909-201ENST00000617113 69 ntBASIC0.21□□□□□ -2.38
PTPN4P29074 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.2□□□□□ -2.38
PTPN4P29074 Y_RNA.68-201ENST00000362881 102 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 Y_RNA.119-201ENST00000363301 96 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 RNA5SP62-201ENST00000363457 110 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 Y_RNA.785-201ENST00000384290 109 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 MIRLET7F2-201ENST00000385277 83 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 snosnR66.1-201ENST00000391095 99 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 RNU2-59P-201ENST00000410482 191 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 AC074198.2-201ENST00000508153 258 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 AC004792.1-201ENST00000614523 137 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 AC105081.1-201ENST00000617727 106 ntBASIC0.2□□□□□ -2.38
PTPN4P29074 SNORA63.5-201ENST00000363548 123 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 Y_RNA.257-201ENST00000364596 102 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 Y_RNA.299-201ENST00000364973 94 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 RNU4-11P-201ENST00000365287 132 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 RNA5SP227-201ENST00000516184 113 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 AC108081.1-201ENST00000604358 221 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 AC244669.1-204ENST00000621564 178 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 AC091304.10-201ENST00000641554 121 ntBASIC0.19□□□□□ -2.38
PTPN4P29074 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.18□□□□□ -2.38
PTPN4P29074 MIR101-2-201ENST00000362195 79 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 RNY1P2-201ENST00000364820 117 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 AC069271.1-201ENST00000445577 156 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 RNU7-197P-201ENST00000458836 62 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 MIR6718-201ENST00000616153 80 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 MIR4315-1-201ENST00000636800 73 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 MIR4315-2-201ENST00000640925 73 ntBASIC0.18□□□□□ -2.38
PTPN4P29074 Y_RNA.56-201ENST00000362798 112 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 Y_RNA.280-201ENST00000364765 112 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 MIR206-201ENST00000384872 86 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 RNU6-1321P-201ENST00000390905 107 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 RNY4P20-201ENST00000516678 93 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 AL137067.1-201ENST00000615933 120 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 TUG1_4.1-201ENST00000619464 181 ntBASIC0.17□□□□□ -2.38
PTPN4P29074 Y_RNA.433-201ENST00000384089 102 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 RNU6-429P-201ENST00000384582 108 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 AC073261.1-201ENST00000429409 121 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 AC244505.6-201ENST00000452829 130 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 AC069113.3-201ENST00000521019 150 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 Y_RNA.778-201ENST00000620203 90 ntBASIC0.16□□□□□ -2.38
PTPN4P29074 RNU6-151P-201ENST00000364158 107 ntBASIC0.15□□□□□ -2.39
PTPN4P29074 RNU6-1130P-201ENST00000365434 107 ntBASIC0.15□□□□□ -2.39
PTPN4P29074 RNU6-449P-201ENST00000383914 107 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms