Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-865P-201ENST00000364772 107 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 SNORD38B-201ENST00000384690 67 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 Y_RNA.567-201ENST00000384736 106 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 MIR520C-201ENST00000385005 87 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 RNU6-602P-201ENST00000411155 105 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.57□□□□□ -2.16
COL3A1P02461 MIR4764-201ENST00000580680 88 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 MIR4658-201ENST00000584344 65 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 SNORD38B-202ENST00000625943 69 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 AC006160.2-201ENST00000637708 154 ntBASIC1.57□□□□□ -2.16
COL3A1P02461 RNU6-24P-201ENST00000384440 107 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 MIR548G-201ENST00000408442 89 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 Y_RNA.607-201ENST00000410597 98 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.56□□□□□ -2.16
COL3A1P02461 RPS29P1-201ENST00000465274 159 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 AC099513.1-201ENST00000490423 301 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 SNORD67.1-201ENST00000516618 108 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 MTND5P40-201ENST00000559945 246 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 CYP3A52P-201ENST00000563326 91 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 MIR8065-201ENST00000620577 100 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 MIR4662A-201ENST00000637499 67 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL3A1P02461 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL3A1P02461 RNU6-633P-201ENST00000362612 103 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 RNU6-509P-201ENST00000363519 107 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 Y_RNA.448-201ENST00000384185 108 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 SPINT5P-201ENST00000448174 155 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.56□□□□□ -2.16
COL3A1P02461 RNU6-857P-201ENST00000515893 110 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 AC019288.1-201ENST00000557918 224 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 AC245884.12-201ENST00000615364 59 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 AC008133.2-201ENST00000624540 351 ntBASIC1.56□□□□□ -2.16
COL3A1P02461 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL3A1P02461 RNU6-1125P-201ENST00000363601 107 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 RNU6-1296P-201ENST00000383879 107 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 RNU6-480P-201ENST00000384332 107 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 RNU6-1237P-201ENST00000384777 107 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 MIR34C-201ENST00000384831 77 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 RNU6-1321P-201ENST00000390905 107 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 Y_RNA.609-201ENST00000410669 89 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 RNU1-98P-201ENST00000458992 160 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 MIR548BB-201ENST00000626714 66 ntBASIC1.55□□□□□ -2.16
COL3A1P02461 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL3A1P02461 RNU6-1123P-201ENST00000362347 106 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 Y_RNA.36-201ENST00000362602 112 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 Y_RNA.221-201ENST00000364248 96 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 RNU6-652P-201ENST00000365488 107 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 MIR548J-201ENST00000408833 112 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 AL161932.1-201ENST00000437408 146 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 RNU7-48P-201ENST00000458875 63 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 RNU6-322P-201ENST00000516010 103 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 MIR4285-201ENST00000581001 85 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 SNORD14A-201ENST00000606526 91 ntBASIC1.54□□□□□ -2.16
COL3A1P02461 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.53□□□□□ -2.16
COL3A1P02461 RPL31P63-201ENST00000422565 375 ntBASIC1.53□□□□□ -2.16
COL3A1P02461 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.53□□□□□ -2.16
COL3A1P02461 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.53□□□□□ -2.16
COL3A1P02461 AC105081.1-201ENST00000617727 106 ntBASIC1.53□□□□□ -2.16
COL3A1P02461 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.53□□□□□ -2.16
COL3A1P02461 RNU6-1244P-201ENST00000363614 108 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 RNA5SP237-201ENST00000410414 113 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 RNA5SP100-201ENST00000410903 110 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 RNA5SP59-201ENST00000410922 110 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 RNU7-137P-201ENST00000516788 62 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 AC012676.2-201ENST00000619258 186 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.52□□□□□ -2.17
COL3A1P02461 Y_RNA.173-201ENST00000363776 113 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 Y_RNA.205-201ENST00000364128 113 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 RNU6-1307P-201ENST00000391012 103 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 AC133485.1-201ENST00000567176 124 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 MIR548AO-201ENST00000579992 96 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 AP001362.1-201ENST00000625165 124 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 MIR4251-201ENST00000635819 61 ntBASIC1.51□□□□□ -2.17
COL3A1P02461 RNY1P13-201ENST00000365030 105 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 MIR653-201ENST00000385279 96 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 RNU6-917P-201ENST00000516294 104 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 SNORA31.17-201ENST00000516953 127 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.5□□□□□ -2.17
COL3A1P02461 MIR4529-201ENST00000578110 78 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 SEPT14P17-201ENST00000617978 177 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 SNORD115-37-201ENST00000363768 82 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 MIR222-201ENST00000384992 110 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 MIR181B2-201ENST00000385004 89 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 MIR519C-201ENST00000385053 87 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 AC093729.1-201ENST00000513074 128 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 AL513043.2-201ENST00000573941 143 ntBASIC1.5□□□□□ -2.17
COL3A1P02461 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
COL3A1P02461 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
COL3A1P02461 RNU6-613P-201ENST00000410412 108 ntBASIC1.49□□□□□ -2.17
COL3A1P02461 RNA5SP436-201ENST00000516020 115 ntBASIC1.49□□□□□ -2.17
COL3A1P02461 AP000753.3-201ENST00000604083 169 ntBASIC1.49□□□□□ -2.17
COL3A1P02461 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.49□□□□□ -2.17
COL3A1P02461 Y_RNA.168-201ENST00000363740 102 ntBASIC1.48□□□□□ -2.17
COL3A1P02461 RNU6-776P-201ENST00000364403 104 ntBASIC1.48□□□□□ -2.17
COL3A1P02461 RNU6-1022P-201ENST00000365049 104 ntBASIC1.48□□□□□ -2.17
COL3A1P02461 RNU6-524P-201ENST00000384270 107 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms